Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00230 ATGGCGTCTCCTCAAGATTCAGTTGCAAAAACGAATGATCAGAAGTCTACAGTCTCCGCCAGGATCACCGGAGAAGGTGGAAAACCTCCTAGTCATGCGTTGATCAGTATCTGCAAGTCTCTTGTTGCCGGTGGAGTCGCCGGAGGAGTTTCACGAACAGCTGTAGCTCCTCTAGAAAGATTGAAGATTCTGCTGCAGGTTCAAAATCGTCACAATGTAAAATACAATGGAACTGTTCAGGGCTTAAAGTATATATGGAAAACTGAGGGTTTTAGGGGAATGTTTAAAGGAAACGGAACCAATTGTGCTCGTATTATCCCAAATTCCGCTGTCAAGTTCTTTAGCTATGAGCAAGCATCTAATGGTATTCTAAGTCTCTATCGGCTGCAAACTGGAAATGAAGAAGCTCAGCTCACTCCTCTTCTGCGTCTTGGAGCTGGGGCATGTGCGGGAATCATTGCAATGTCTGCAACTTACCCTATGGACCTGGTGCGAGGACGCCTAACCGTACAGACAGAAGCATCTCCTCAGCAATATAGAGGAATTTTTAATGCTCTTTCAACAGTCTTCCGAGAAGAAGGCGCTAGAGCATTGTATAAAGGATGGTTACCTTCAGTCATAGGAGTTATACCATACGTTGGTCTAAATTTTTCTGTATATGAATCTCTGAAAGACTGGTTGATTCAAACAAAACCACTTGGAATAGCTCAAGACTCGGAGCTAAGTGTGACCACAAGGCTTGCATGTGGGGCTGCTGCTGGAACTATTGGACAGACAGTGGCATACCCCCTTGATGTCATTCGCAGAAGAATGCAGATGGGTGGATGGAAAGGCGCTGCTTCGATTGTATCTGCTGATGGGAAGGGTCTTGAGTATACTGGCATGGTTGATGCATTCAGGAAAACAGTAAAGTATGAGGGATTTGGGGCATTATACAAGGGCTTAGTCCCCAATTCAGTCAAGGTGGTACCTTCCATTGCCATTGCCTTTGTGTCATACGAGATGGTCAAGGACGTCCTTGGAGTTGAAGTGCGAATATCTGACTGA 1047 0.4537 MASPQDSVAKTNDQKSTVSARITGEGGKPPSHALISICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNRHNVKYNGTVQGLKYIWKTEGFRGMFKGNGTNCARIIPNSAVKFFSYEQASNGILSLYRLQTGNEEAQLTPLLRLGAGACAGIIAMSATYPMDLVRGRLTVQTEASPQQYRGIFNALSTVFREEGARALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIQTKPLGIAQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMGGWKGAASIVSADGKGLEYTGMVDAFRKTVKYEGFGALYKGLVPNSVKVVPSIAIAFVSYEMVKDVLGVEVRISD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00230 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 241 339 IPR018108 -
Tsu05g00230 348 Pfam Mitochondrial carrier protein 240 340 IPR018108 -
Tsu05g00230 348 Pfam Mitochondrial carrier protein 36 122 IPR018108 -
Tsu05g00230 348 Pfam Mitochondrial carrier protein 138 229 IPR018108 -
Tsu05g00230 348 SUPERFAMILY Mitochondrial carrier 35 335 IPR023395 -
Tsu05g00230 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 35 122 IPR018108 -
Tsu05g00230 348 MobiDBLite consensus disorder prediction 1 21 - -
Tsu05g00230 348 PRINTS Mitochondrial carrier protein signature 40 53 IPR002067 GO:0055085
Tsu05g00230 348 PRINTS Mitochondrial carrier protein signature 53 67 IPR002067 GO:0055085
Tsu05g00230 348 PRINTS Mitochondrial carrier protein signature 97 117 IPR002067 GO:0055085
Tsu05g00230 348 PRINTS Mitochondrial carrier protein signature 153 171 IPR002067 GO:0055085
Tsu05g00230 348 PRINTS Mitochondrial carrier protein signature 199 217 IPR002067 GO:0055085
Tsu05g00230 348 PRINTS Mitochondrial carrier protein signature 250 272 IPR002067 GO:0055085
Tsu05g00230 348 Gene3D Mitochondrial carrier domain 32 342 IPR023395 -
Tsu05g00230 348 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 25 343 - -
Tsu05g00230 348 MobiDBLite consensus disorder prediction 1 28 - -
Tsu05g00230 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 138 226 IPR018108 -
Tsu05g00230 348 PANTHER SOLUTE CARRIER FAMILY 25 25 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00230 Tsu-Chr5 1685186 1688032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00230 41 343 EF-hand Containing Proteins AT5G51050 39.803 2.42e-66 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00230 K14684 - nnu:104603959 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00230 05 1685186 1688032 Tsu05g00230 05 1685186 1688032 ECH