Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00223 ATGGCGGCAGAACAGAAGAGATTCATCATTGAAGTTGAAAAAGCAAAGGAAGCAACTGAAGATAGACCTTCAAGAGGACCTGCTTACCGTAGCATCTTCGCTAAAGATGGATTTCCTGCTCCTATTCAAGGTCTTGATTGTTGCTGGGATGTTTTTCGATTGTCTGTTGAGAAGTATCCAAATAATCCTATGCTTGGTACCCGAGAGATAGTGGATGGGAAGCATGGCAAGTACAAGTGGCAAACTTACAAAGAAGTATATGATATGGTGATCAAAGTCGGAAATTCCATCCGCAGCTGTGGTTATGGAGAAGGTGTAAAATGTGGTATTTATGGTGCCAATTCTGCAGAGTGGATTATGAGCATGGAgGCTTGCAATGCTCATGGACTTCTTTGTGTTCCTTTATATGATACCTTAGGTTCTGGGGCCATAGAATTTATTATATCCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGctGTTGAAGACATTTCCAAATGCAACCAAATATCTCAAGACCATTGTGAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAAGTTTGGGTTGGCAATATATTCATGGACTGAATTTTTACAATTGGGTGAAAGTCAGAGTTTTGATCTACCTACAAAGAAAAGAAGCGATATCTGTACAATAATGTATACTAGCGGAACTACTGGTGACCCCAAGGGAGTATTGATATCCAATGAGAGTATTATTACCCTCTTAGCCGGGGTTAAGCGGCTGTTGGAGAGTGTCAATGAAAAATTGGTTGTGAAAGATGTGTACTTATCATACCTTCCTCTCGCACATATCTTTGATAGGGTCATTGAGGAGACATTTATATGGCATGGTGCCTCGATAGGCTTCTGGCGTGGGGATGTTAAACTGCTAATTGAAGACCTCGGGGAGCTAAAACCAACTATTTTCTGTGCTGTACCCCGTGTACTTGATAGAGTGTACACAGGTTTGACACAGAAAATTTCTTCTGGAGGCTTCCTTAAGAAGACATTATTCAACTTTGCTTTTTCATATAAGTTGAATAACATGAAGAAAGGGCATAAGCATTCAGCAGCATCTCCACTTCTTGACAAAGTTGTGTTTGATAAGGTGAAGCAAGGTTTAGGGGGGCATGTACGTCTTATTTTGTCTGGAGCAGCACCTCTATCTATGCATGTGGAAAATTACTTACGGGTGGTGACTTGTTCTCATGTCCTACAAGGATATGGTCTGACCGAAACCTGTGCGGGAACCTTTGTCTCATTACCTAATGAACTAGACATGCTGGGAACAGTGGGTCCTCCTGTACCCAATGTGGATGCATGCCTGGAATCTGTTCCTGAAATGGGTTATGATGCCCTTGCAAGCACACCAAGAGGAGAAATTTGTGTAAAGGGTGATACCTTGTTTTCAGGGTACTACAAACGTGAAGACCTTACGAAAGAAGTTCTGGTTGATGGATGGTTCCATACAGGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAGATTATTGACCGGAAGAAGAATATATTCAAGCTTTCACAAGGAGAATATGTTGCCGTTGAAAACCTGGAAAATATTTTTAGCCAAGTTCCTTCTATTGAATCTATATGGGTTTACGGAAACAGTTTTGAGGCCTTCCTTGTTGCTGTTGTTACCCCCAGCAAGCAGGCACTTGAACATTGGGCAGAAGAAAATGGTATATCCATGGACTTCAATTCTCTCTGTGAAGATTCTAGGGCAAAAACTTACATACTTGAAGAGCTCTCAAAGATTGGAAAGGAAAAGAAGTTGAAAGGATTTGAGTTTATAAAAGCAGTTCATCTTGACCCAGTTCCATTAGATATGGAACGTGACCTTATCACTCCAACATATAAGAAGAAGAGGCCTCAGCTGCTTAAATATTATCAGAATGTGATTGATAACATGTACAAAAGTGGAAATAAACCCCGTGCCTGA 1995 0.41 MAAEQKRFIIEVEKAKEATEDRPSRGPAYRSIFAKDGFPAPIQGLDCCWDVFRLSVEKYPNNPMLGTREIVDGKHGKYKWQTYKEVYDMVIKVGNSIRSCGYGEGVKCGIYGANSAEWIMSMEACNAHGLLCVPLYDTLGSGAIEFIISHAEVSIAFAEEKKIPELLKTFPNATKYLKTIVSFGKVTPEQKQEVEKFGLAIYSWTEFLQLGESQSFDLPTKKRSDICTIMYTSGTTGDPKGVLISNESIITLLAGVKRLLESVNEKLVVKDVYLSYLPLAHIFDRVIEETFIWHGASIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYTGLTQKISSGGFLKKTLFNFAFSYKLNNMKKGHKHSAASPLLDKVVFDKVKQGLGGHVRLILSGAAPLSMHVENYLRVVTCSHVLQGYGLTETCAGTFVSLPNELDMLGTVGPPVPNVDACLESVPEMGYDALASTPRGEICVKGDTLFSGYYKREDLTKEVLVDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIFSQVPSIESIWVYGNSFEAFLVAVVTPSKQALEHWAEENGISMDFNSLCEDSRAKTYILEELSKIGKEKKLKGFEFIKAVHLDPVPLDMERDLITPTYKKKRPQLLKYYQNVIDNMYKSGNKPRA 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00223 664 ProSitePatterns Putative AMP-binding domain signature. 229 240 IPR020845 -
Tsu05g00223 664 Gene3D - 44 518 IPR042099 -
Tsu05g00223 664 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 256 658 - -
Tsu05g00223 664 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 54 254 - -
Tsu05g00223 664 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 5 54 - -
Tsu05g00223 664 SUPERFAMILY Acetyl-CoA synthetase-like 45 657 - -
Tsu05g00223 664 CDD LC-FACS_euk 76 657 IPR045311 GO:0004467|GO:0006631
Tsu05g00223 664 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 54 254 - -
Tsu05g00223 664 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 54 - -
Tsu05g00223 664 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 256 658 - -
Tsu05g00223 664 Pfam AMP-binding enzyme 55 526 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00223 Tsu-Chr5 1615599 1623774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00223 3 660 Acyl Lipid Metabolism Gene Families AT4G23850 75.228 0.0 1067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00223 K01897 - gmx:100814965 1228.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00223 05 1615599 1623774 Tsu05g00223 05 1615599 1623774 ECH
Tsu05g00223 05 1615599 1623774 Tsu02g00373 02 3127582 3133722 PCT