LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g04541	ATGGCAAATAAAATACTTATTGGTTTTCTCCTTATAGCCTTTTTGGGTGTAGCTTCTGCTGCTAGTAATTTCAATCAATATTTTGATATAACATGGGGTGATGGTCGTGGCAAAATCCTTAACAATGGACAACTTCTTACTCTGTCTTTGGACAAAGCCTCTGGCTCTGGATTTCGTTCCAAAAATCAATACTTGTTTGGAAAAATTGACATGCAACTCAAGCTTGTACCTGGTAACTCTGCTGGAACAGTCACAACATATTATCTATCTTCTCTTGGTGGTGCTCATGATGaaatagattttgaatttttgggtaACTTAAGTGGCGATCCTTATATTGTTCATACAAACATTTATGCACAAGGGAAAGGGAACAAAGAACAGCAATTCTATTTATGGTTCGACCCCACCAAGGACTTTCACACTTATTCCATTCTTTGGAACCCTCAAAGCATCATATTTTCTGTGGATGGGACCCCTCTAAGAGAATTCAAGAATTTTGAATCAAAAGGTATTCCTTTTCCAAGAAGCCAAGCAATGAGTATATACTCAAGCCTTTGGGATGCTGATAATTGGGCCACAAGAGGAGGCCTGGTGAAAACAGATTGGGCCCAAGCCCCATTCACTGCTTCATATGGAAATTTCAATATCCAAGCTTGTGTTTTGACTTCTTCAGGCTCCTCTTGCTCTTCCAAACATCCAACTTCAGATCAATCATGGATGAAACAATCATTAGATTCTACAGGACAAGCTAGGATTAAATGGGTGCAAAAGAATTACATGATTTATAATTATTGCACTGATACAAAGCGGTTTCCTCAAGGCATCCCTCTTGAATGCTCACTTGcatga	852	0.3791	MANKILIGFLLIAFLGVASAASNFNQYFDITWGDGRGKILNNGQLLTLSLDKASGSGFRSKNQYLFGKIDMQLKLVPGNSAGTVTTYYLSSLGGAHDEIDFEFLGNLSGDPYIVHTNIYAQGKGNKEQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPLREFKNFESKGIPFPRSQAMSIYSSLWDADNWATRGGLVKTDWAQAPFTASYGNFNIQACVLTSSGSSCSSKHPTSDQSWMKQSLDSTGQARIKWVQKNYMIYNYCTDTKRFPQGIPLECSLA	283

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g04541	283	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	236	280	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Tsu04g04541	283	PRINTS	Glycosyl hydrolase family 16 signature	56	74	IPR008264	GO:0004553\|GO:0005975
	Tsu04g04541	283	PRINTS	Glycosyl hydrolase family 16 signature	114	127	IPR008264	GO:0004553\|GO:0005975
	Tsu04g04541	283	PRINTS	Glycosyl hydrolase family 16 signature	132	149	IPR008264	GO:0004553\|GO:0005975
	Tsu04g04541	283	Pfam	Glycosyl hydrolases family 16	25	204	IPR000757	GO:0004553\|GO:0005975
	Tsu04g04541	283	PIRSF	EndGlu_transf	1	283	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Tsu04g04541	283	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	98	108	IPR008263	GO:0004553\|GO:0005975
	Tsu04g04541	283	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	1	212	IPR000757	GO:0004553\|GO:0005975
	Tsu04g04541	283	CDD	GH16_XET	20	280	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Tsu04g04541	283	SUPERFAMILY	Concanavalin A-like lectins/glucanases	23	282	IPR013320	-
	Tsu04g04541	283	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	8	282	IPR044791	GO:0004553
	Tsu04g04541	283	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	8	282	-	-
	Tsu04g04541	283	Gene3D	-	12	282	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g04541	Tsu-Chr4	53071456	53073175	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g04541	7	283	Glycoside Hydrolase	AT4G25810	69.065	2.21e-145	407

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g04541	K14504		-	gmx:100807063	476.863

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g04541	04	53071456	53073175	Tsu08g02675	08	40809371	40812914	PCT