Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04462 ATGGCGACTACTCAACTCACTGCATCATCGATTTCAACGAGGAACTTGTCATCCTTTGAAGGGCTTCGAACTTCTGCAATTCAATTTTCTCGTAACAATGCTAGAATTGGCATTCTATCACAAAGATCGTTCCCGTCTATGGTTGTTAAAGCTGCCGCCACTGTTCTTACCCCCAAGCATACCACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATTAAGGATGCAGAAGAGAAAACTGCAAGTGGAATTATACTTCCATCAACTGCTCAATCAAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGGAAGACAGTTGGGAAGAGCAAAGTTGAAATTAGTGCAGGTGCACAAGTTGTGTATTCGAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATACTCAAGGATGATGACATTGTTGGTATCCTTGAAACCGAGGAGGTCAAGGATCTTAAACCCTTGAATGATAGAGTCTTGATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACAGAGGCAACCAAGGAGAAACCATCCATCGGCACTGTGATAGCAGTTGGTCCAGGGCCTGTGGACGATGAAGGCAACCGAAAACCATTATCCATTACACCCGGGAATACAGTTCTGTACTCCAAATATGCAGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTGCTTTGAGAGCCTCAGATCTCATCGCTATCCTCTCTTag 759 0.444 MATTQLTASSISTRNLSSFEGLRTSAIQFSRNNARIGILSQRSFPSMVVKAAATVLTPKHTTVKPLGDRVLVKIKDAEEKTASGIILPSTAQSKPQGGEVVAVGEGKTVGKSKVEISAGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPVDDEGNRKPLSITPGNTVLYSKYAGNDFKGKDGSDYIALRASDLIAILS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04462 252 Gene3D GroES chaperonin 55 154 IPR037124 GO:0006457
Tsu04g04462 252 Gene3D GroES chaperonin 155 252 IPR037124 GO:0006457
Tsu04g04462 252 PIRSF Cpn21 1 252 IPR017416 GO:0006457|GO:0046914|GO:1901671
Tsu04g04462 252 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 PRINTS 10kDa chaperonin signature 117 129 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 PRINTS 10kDa chaperonin signature 138 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 Pfam Chaperonin 10 Kd subunit 159 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 Pfam Chaperonin 10 Kd subunit 63 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 SMART Cpn10_2 62 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 SMART Cpn10_2 158 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 Hamap Co-chaperonin GroES [groES]. 62 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524|GO:0006457
Tsu04g04462 252 SUPERFAMILY GroES-like 61 152 IPR011032 -
Tsu04g04462 252 PANTHER GROES CHAPERONIN 1 252 - -
Tsu04g04462 252 Hamap Co-chaperonin GroES [groES]. 158 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 SUPERFAMILY GroES-like 158 251 IPR011032 -
Tsu04g04462 252 CDD cpn10 62 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tsu04g04462 252 ProSitePatterns Chaperonins cpn10 signature. 159 183 IPR018369 GO:0005524|GO:0006457
Tsu04g04462 252 CDD cpn10 159 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04462 Tsu-Chr4 52426048 52428266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04462 1 252 Calmodulin-binding Proteins AT5G20720 72.656 3.80e-129 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04462 K04078 - gmx:100804915 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04462 04 52426048 52428266 Tsu04g04462 04 52426048 52428266 ECH
Tsu04g04462 04 52426048 52428266 Tsu08g02359 08 34231168 34234529 PCT