Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04448 ATGGCTGGTTTGACTAGAGTTCATAGTCTCCGTGAGAGGCTTGATGAAACCTTAACTGCTAACAGGAATGAAATTTTAGCTCTTCTTTCAAGGATTGAAGCAAAGGGAAAGGGAATCTTGCAACATCATCAAATTATTGCTGAGTTTGAGGAAATTCCTGAAGAGAGTAGACAGAAGCTGAGTGATGGTGCTTTTGGTGAAGTTTTAAGATCCACACAGGAAGCTATAGTTTTGCCACCTTGGGTTGCTCTTGCAGTTAGACCAAGGCCAGGTGTTTGGGAATATCTTAGAGTGAATGTGCATGCTCTTGTTGTTGAAAATTTGCAACCTGCTGAGTTTTTGAAATTCAAGGAAGAACTTGTTGATGGAAGTGCTAATGGTAACTTTGTGCTTGAGTTGGATTTTGAACCATTTACTGCATCTTTCCCTCGTCCTACTCTCAACAAGTCAATTGGAAATGGTGTGCAGTTTCTCAACCGTCACCTTTCTGCAAAACTCTTCCATGACAAGGAGAGTTTACATCCACTTTTGGAATTTCTCAGACTTCACAGCTATGAGGGAAAGACATTGATGTTGAATGACAGAGTTCAAAACCCTGATTCTCTTCAACATGTTCTGAGGAAAGCTGAAGAGTATCTAGGCACAGTTGCTCCTGAAACACCATACTCAGAATTTGAGCACAAGTTCCAGGAGATTGGTTTGGAGAGGGGTTGGGGTGCCACCGCAGACCGCGTCCTCGAGTCCATTCAACTTCTCTTGGATCTTCTCGAGGCACCTGACCCTTGCACCCTTGAGACATTCCTTGACAGAATCCCTATGGTCTTTAATGTTGTCATCCTTTCTCCTCATGGTTACTTTGCTCAAGATGATGTCTTGGGATACCCTGATACCGGTGGCCAGGTTGTTTACATCTTGGATCAAGTCCGTGCCTTGGAGAACGAGATGCTCCTTCGCATTAAGCAACAGGGCTTGGATATCATCCCTCGCATTCTCATTATCACTCGTCTTCTCCCCGATGCAGTTGGTACTACTTGTGGCCAAAGGCTTGAGAAGGTCTACGGAACTGAACATTGCCACATTCTTCGAGTTCCCTTCAGAGATTCGAAGGGAATTGTTCGCAAGTGGATCTCACGATTCGAAGTCTGGCCATATCTAGAAACTTACACTGAGGATGTTGCTCATGAGCTTGCCAAAGAGTTGCATGGCAAACCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTTGCTTCTTTGTTGGCACATAAATTAGGTGTCACTCAGTGTACCATTGCTCATGCACTTGAGAAGACCAAATACCCCGAATCCGATATTTACTGGAAAAAATTCGAAGAGAAGTATCACTTCTCGTGCCAATTTACTGCTGATCTTTTCGCAATGAACCACACCGATTTCATCATTACTAGTACCTTCCAAGAGATTGCTGGAAGCAAGGATACTGTTGGACAGTATGAGAGCCACACTGCCTTTACTCTTCCAGGACTTTACCGTGTCGTGCACGGTATTGATGTCTTTGATCCTAAGTTTAACATTGTATCTCCAGGAGCTGATCCAACCATTTACTTCCCTTACACCGAAACTAGCCGCAGGTTGACATCCTTCCACCCTGAAATCGAAGAGCTTCTTTACAGTTCAGTGGAGAATACTGAGCACATATGTGTGTTGAAGGACCGCAACAAACCGATTATTTTCACCATGGCAAGGTTGGACCGTGTGAAGAACATTACAGGACTAGTTGAGTGGTACGGAAAGAACGCCAAGCTTCGTGAGTTGGTGaaccttgttgttgttgctggAGACAGAAGGAAGGAGTCAAAGGACTTGGAAGAGATAGCTGAGATGAAGAAGATGTATGGCCTAATCGAAACCTACAAGTTGAATGGCCAATTCAGATGGATTTCCTCTCAGATGAACCGTGTCAGAAACGGAGAACTATACCGTGTCATTTGTGACACAAAGGGAGCTTTTGTGCAGCCTGCTGTGTACGAAGCTTTCGGTTTAACAGTTGTTGAGGCCATGGCTACTGGATTGCCAACATTTGCAACACTAAATGGTGGACCTGCTGAGATCATTGTCCACGGAAAATCTGGATTCCACATTGATCCTTACCATGGCGACCGTGCTGCTGATCTCCTTGTTGAATTCTTTGAGAAATGTAAGGTTGATCCATCTCACTGGGACACAATCTCTCACGGTGGTCTCCAACGTATCGAAGAGAAATATACATGGAGAATTTACTCTCAGAGGCTTCTTACACTCACTGGTGTCTATGGCTTCTGGAAGCATGTTTCTAACCTCGACCGCCTTGAGAGCCGTCGCTATCTTGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCAGTGCCCCTAGCTGTGGAGGAGTAA 2415 0.4422 MAGLTRVHSLRERLDETLTANRNEILALLSRIEAKGKGILQHHQIIAEFEEIPEESRQKLSDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVENLQPAEFLKFKEELVDGSANGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSYEGKTLMLNDRVQNPDSLQHVLRKAEEYLGTVAPETPYSEFEHKFQEIGLERGWGATADRVLESIQLLLDLLEAPDPCTLETFLDRIPMVFNVVILSPHGYFAQDDVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDIIPRILIITRLLPDAVGTTCGQRLEKVYGTEHCHILRVPFRDSKGIVRKWISRFEVWPYLETYTEDVAHELAKELHGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADPTIYFPYTETSRRLTSFHPEIEELLYSSVENTEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEIAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKCKVDPSHWDTISHGGLQRIEEKYTWRIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04448 804 TIGRFAM sucr_synth: sucrose synthase 22 800 IPR012820 GO:0005985|GO:0016157
Tsu04g04448 804 Pfam Sucrose synthase 6 551 IPR000368 GO:0005985|GO:0016157
Tsu04g04448 804 Gene3D - 144 273 - -
Tsu04g04448 804 Gene3D Glycogen Phosphorylase B; 278 794 - -
Tsu04g04448 804 Pfam Glycosyl transferases group 1 562 725 IPR001296 GO:0016757
Tsu04g04448 804 PANTHER SUCROSE SYNTHASE 4 803 - -
Tsu04g04448 804 PANTHER - 4 803 IPR012820 GO:0005985|GO:0016157
Tsu04g04448 804 Gene3D - 23 143 - -
Tsu04g04448 804 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 293 760 - -
Tsu04g04448 804 Gene3D Glycogen Phosphorylase B; 525 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04448 Tsu-Chr4 52270548 52275515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04448 4 804 Glycosyltransferase AT3G43190 84.395 0.0 1416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04448 K00695 - gmx:547508 1522.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04448 04 52270548 52275515 Tsu04g04448 04 52270548 52275515 ECH
Tsu04g04448 04 52270548 52275515 Tsu08g02392 08 35171947 35178004 PCT