Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04357 ATGACGTTTGTTTCGCTCTTCCTCACCGCCACTAAACTCGCCGGAGCTTTAGCCACTCTCACCGTCGCCGCCAATGTCTTCTCCTTCTCTCGTTTCCGCAACAAAAACCTTAGCCGTTTTCGTTCCCCTATTGATGAATCCTCCGATACTCTCGCCGATTTCAACAATAACACCACCGAAGGAGAAGATGGGTTTTTCTTTGGGCTGGCCACAGCACCGGCACATGTTGAGGACAAACTTGATGATGCTTGGATTCAATTTGCTGAGCAAGAAAGTGTTGTTGGTGCTGAGCAGAAAGTGGACGCTTTGATGGGCTCTGCCACTGCTGACGGTGGGTCTCAACAAGCTGTATCAACTCCACAACATGCTAGGAAGGGAAACAAGAAGTCTCTTAAGGTAGCTATGGAGGCCATGATCAGAGGATTTGAGAAATACATGGAAGTAGATGAACAGGAAGGCGAAGAAGAATGCATTCCTAATGTAACTGCTTGGCATAATGTTCCTCACCCGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGATACAGAACTAAAATTGGCCAAGGGTACTGGTGTTACTGTTTTTCGTATGGGAATTGACTGGTCAAGAATCATGCCCAAGGAGCCAGTAAATGGCCTTAAAGAATCTGTCAACTATGCTGCATTGGAGCGTTATAAGTGGATTATCAATAGGGTTCGATCATATGGAATGAAGGTGATGCTCACTCTTTTTCATCACTCACTTCCACCCTGGGCAGGTGATTACGGAGGTTGGAAGCTGGAAAAGACGGTGGATTATTTCATGGACTTTACCAGGCTTGTTGTTGACAGTGTATCAGATTTAGTAGACTATTGGATAACATTTAATGAGCCTCATGTCTTTTGTATGCTTACTTATTGTTCTGGCACCTGGCCTGGCGGACATCCTGATATGCTGGAGGCTGCTACTTCCGCACTTCCTACAGGTGTTTTCCAGCAGGCCATGCATTGGATATCTGTTGCACACTTAAAGGCATATGATTACATCCACGAACTCAGTAACTCATCAAATCCAATAGTTGGTGTTGCACATCATGTGTCGTTTATGCGACCCTATGGTCTGTTTGATATTGCCGCTGTTTCATTGGCTAATTCATTGAGTCTCTTCCCATTCATTGATGAAATATCCAAAAAGCTGGATTTTATAGGCATCAACTATTATGGCCAGGAAGTGGTTTCAGGTGCTGGCCTAAAGCTGGTGGAAAATGACGAGTACAGTGAATCTGGTCGTGGGGTATATCCTGATGGCTTATATCGCATGTTGCTTCAGTTCCATGAAAGATACAAGCATCTAAATATGCCCTTCATTATTGCTGAAAATGGAGTTGCAGATGAAACTGATTTGATCCGCCGGCCGTATCTCTTGGAGCATTTGCTTGCTGTTCATGCAGCTATGATTGAGGGTGTGGCTGTGCTTGGTTACCTATTCTGGACTATTTCTGATAACTGGGAGTGGGCCGATGGATATGGCCCCAAGTTTGGACTTGTTGCAGTTGACAGAGCAAATAATCTTGCACGGATCCCTCGCCCTTCTTACCATCTGTTTTCTAAAGTTGTGAATACCGGCAAAGTTACACGTGAAGATCGTGAAGAAGCTTGGAATGAACTTCAAAGAGCTGCTGAAGAGAAGAAGACACGACCATTTTATCGGGCTGTGGACAAAAATGGTTTAATGTTGGCAGGTGGACTTGATGAACCCATACAGCGACCTTATATAGAAAGAGATTGGCGGTTTGGTCATTATGAGATGGATGGTGCAGTGTGCCGTATTGATccattttggagaatttctcgCTTATTGGAAACGGAAGAGAATTGCATTCAGGACTGCATTATATATCAAGGTTACATCACTGTCAATGAAAAGCATGGAAGGGCCCTTTTCTATTGGTTCTTTGAAGCTCAATCTGGACCCTCCAATAAGCCTTTGCTTCTATGGCTCAATGGAGGACCTGGATGCTCCTCAATTGGATATGGTGCTCTTGTTGAGATAGGACCTCTTTTAGTCAACAAAAATGGTGAAGGACTATCATTCAATCCATACTCTTGGAATCAAGGTATATCtacttttatgttttctttccatttttggactatgaagtatatatatatatactcctatGTTTGA 2166 0.4271 MTFVSLFLTATKLAGALATLTVAANVFSFSRFRNKNLSRFRSPIDESSDTLADFNNNTTEGEDGFFFGLATAPAHVEDKLDDAWIQFAEQESVVGAEQKVDALMGSATADGGSQQAVSTPQHARKGNKKSLKVAMEAMIRGFEKYMEVDEQEGEEECIPNVTAWHNVPHPEERLRFWSDPDTELKLAKGTGVTVFRMGIDWSRIMPKEPVNGLKESVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGDYGGWKLEKTVDYFMDFTRLVVDSVSDLVDYWITFNEPHVFCMLTYCSGTWPGGHPDMLEAATSALPTGVFQQAMHWISVAHLKAYDYIHELSNSSNPIVGVAHHVSFMRPYGLFDIAAVSLANSLSLFPFIDEISKKLDFIGINYYGQEVVSGAGLKLVENDEYSESGRGVYPDGLYRMLLQFHERYKHLNMPFIIAENGVADETDLIRRPYLLEHLLAVHAAMIEGVAVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKVVNTGKVTREDREEAWNELQRAAEEKKTRPFYRAVDKNGLMLAGGLDEPIQRPYIERDWRFGHYEMDGAVCRIDPFWRISRLLETEENCIQDCIIYQGYITVNEKHGRALFYWFFEAQSGPSNKPLLLWLNGGPGCSSIGYGALVEIGPLLVNKNGEGLSFNPYSWNQGISTFMFSFHFWTMKYIYIYSYV 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04357 721 Pfam Serine carboxypeptidase 626 698 IPR001563 GO:0004185|GO:0006508
Tsu04g04357 721 PANTHER GALACTOLIPID GALACTOSYLTRANSFERASE SFR2, CHLOROPLASTIC 3 594 - -
Tsu04g04357 721 PRINTS Glycosyl hydrolase family 1 signature 391 405 IPR001360 GO:0004553|GO:0005975
Tsu04g04357 721 PRINTS Glycosyl hydrolase family 1 signature 460 471 IPR001360 GO:0004553|GO:0005975
Tsu04g04357 721 PRINTS Glycosyl hydrolase family 1 signature 448 456 IPR001360 GO:0004553|GO:0005975
Tsu04g04357 721 PRINTS Glycosyl hydrolase family 1 signature 481 498 IPR001360 GO:0004553|GO:0005975
Tsu04g04357 721 PRINTS Glycosyl hydrolase family 1 signature 505 517 IPR001360 GO:0004553|GO:0005975
Tsu04g04357 721 MobiDBLite consensus disorder prediction 108 124 - -
Tsu04g04357 721 SUPERFAMILY alpha/beta-Hydrolases 625 698 IPR029058 -
Tsu04g04357 721 Gene3D Glycosidases 135 547 - -
Tsu04g04357 721 PANTHER GLYCOSYL HYDROLASE 3 594 IPR001360 GO:0004553|GO:0005975
Tsu04g04357 721 Pfam Glycosyl hydrolase family 1 386 534 IPR001360 GO:0004553|GO:0005975
Tsu04g04357 721 Pfam Glycosyl hydrolase family 1 181 366 IPR001360 GO:0004553|GO:0005975
Tsu04g04357 721 Gene3D alpha/beta hydrolase 616 706 IPR029058 -
Tsu04g04357 721 MobiDBLite consensus disorder prediction 107 128 - -
Tsu04g04357 721 SUPERFAMILY (Trans)glycosidases 163 540 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04357 Tsu-Chr4 51478652 51497108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04357 4 613 Glycoside Hydrolase AT3G06510 62.442 0.0 824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04357 K21362 - gmx:100792401 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04357 04 51478652 51497108 Tsu04g04357 04 51478652 51497108 ECH