Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04339 ATGACAAATTTTAAGCCATTAGCAATAACTATCATCTTGTGCTTTTTTGTTTCAAGTCACTGCACAATTATCAATCCAAAAAACAATAATGGAAATTTGATTCAACAAACTTGCAAGCAAACTCCAAATTATGCAATTtgcattcaatacctcaaaTCTGATCCAAGAAGTTCTGATGCAGATTTAACAGGTCTAGCACTAATCATGGTGGATATAATCAAATCCAAAGCAAACACTACcttaaacaaaatcaatcaacTGATTAAGGGGAAACAAGAACCTAATCAAAAGGAAGCTTTGAATTCATGTGCTGGTAGATACAAAGCAATTTTGGTAGCTGATGTTCCAAAATCTGTTGCAGCTTTGAAACAAGGGGATCCTAAATTTGCTGAAGATGGTGCAAATGATGCTGCAGTTGAAGCAAATACTTGTGAGAATGGTTTCAAAGGGAAATCACCACTCTCTGATCAGAATATTGCTATGCATGATGTAGCAGCTATAACTGCAGCTATTGTTAAACAATTGCTCTAG 531 0.3296 MTNFKPLAITIILCFFVSSHCTIINPKNNNGNLIQQTCKQTPNYAICIQYLKSDPRSSDADLTGLALIMVDIIKSKANTTLNKINQLIKGKQEPNQKEALNSCAGRYKAILVADVPKSVAALKQGDPKFAEDGANDAAVEANTCENGFKGKSPLSDQNIAMHDVAAITAAIVKQLL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04339 176 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 175 IPR035513 -
Tsu04g04339 176 SMART PMEI_2 29 171 IPR006501 GO:0004857
Tsu04g04339 176 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 175 IPR006501 GO:0004857
Tsu04g04339 176 CDD CIF_like 32 175 IPR034087 GO:0004857|GO:0043086
Tsu04g04339 176 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 12 176 - -
Tsu04g04339 176 Pfam Plant invertase/pectin methylesterase inhibitor 32 171 IPR006501 GO:0004857
Tsu04g04339 176 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 176 IPR035513 -
Tsu04g04339 176 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04339 Tsu-Chr4 51337397 51338126 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04339 - - mtr:MTR_4g122760 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04339 04 51337397 51338126 Tsu04g04339 04 51337397 51338126 ECH