Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04318 ATGAACTCAATTCCTTCTCCTCCATCTGCTACACTCTTCACTCAGTCCAAAAATCCTAACCATCTCTTCAAATTCAACCTCAAAGTTCCCATTTTACCCTTCCATTCTTCATCTTCCAATCTCACCACACCATGTTGCACTCTGAGAGACTCAACTTCTTCAGtgttggacaaaaatgcccctaCCTCCGAACAGAGTACCCTCAATTACATTCCACCTAAAGACTCAAACTTTGAAGGAACACTTGTGGTTCGTCGGCCGGTGAAGGAATTTTCCGGCCAAAACTCTGATGAGAAGGAAGAACAAGATAATTATGAAACAGAGGAAGAGGAGCCAAAAGCTTCTTCAATTGATGCCGGGCTAACGAAATTTGCGAAGAAGATGCCGATGTTTGAACCGGGGAGGGTTGAATCAGACTCAGAAGAGAAGCCTTTGACTGTGAATTTGGACTTGGCGTTATATAAGGCCAAGGTTTTGACAAGAAACTTTCGTTATGAAGAAGCAGAGGAAATACTTCAGCAGTGTTTATGCTATTGGCCTGAAGATGGTAGACCTTATGTGGCACTTGGAAAAGTTTTCAGTAAGCAATCTAAAACAAGTCAAGCTAGAGAGGTTTATGAGAAGGGTTGCCAGGCTACTCAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTTGAAAATAGAATGGGGAATGTCCGGAGAGCAAGAAAGCTTTTCGATGCTGCAACGGTTGCTGATAAGAAGCATGTTGCGGCTTGGCATGGTTGGGCAGTTCTAGAGTTAAAGCAGGGAAATATACAGAAGGCAAGGAGTCTGCTTTCAAAAGGTCTTCAATATTGTGGACAAAATGAGTACATATACCAAACACTTGCATTGCTTGAAGTTAAGGCAAATAGATATCAGCAGGCTCGATATTTATTCAATCAGGCCACAAAGTGTAATCCAAAAAGTTGTGCTAGTTGGCTTgCTTGGGCTCAAATGGAGGTGGAACAGGAAAATAATCGTACCGCGAGGAAACTTTTTGAGAATGCAGTGCAGGCAAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCGTATTTGAAGCAAACTTAGGAAAGATTGAGAAGGgaaaaaaactactaaagatTGGCCATGCTCTAAATCCGAGGGATGCCGTTCTCCTGCAGTCTCTCGCATTAATAGAATACAAACACTCAAGTGCAAACCGTGCTCGTGTTTTGTTCAGGAGAGCATCTGAATTGGATCCGAAGCATCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACTTGAATACAGCTAGAGAGTTATACAAAAAAGCTTTATCAATTGATCCAAACAGTGAAAGTGCTGCAAGGTGTCTCCAGGCATGGGGTGTTCTGGAGCAGAGGGTTGGCGATCTTTCAACTGCTCGTAGATTATTTAGATCCtcattaaatataaattctCAGAGTTATGTGACATGGATGACTTGGGCATCACTAGAGGAAGATCAAGGAAATTCCGTGCGTGCTGAAGAGATTCGTAACCTTTATTTCCAGCAGCGCACGGAAGTTGTAGATGATGCTTCATGGGTTATGGGATTCTTAGATATTTTAGACCCTGCCATTGACAGCTTGAAGAGACTCTTGAAGATGGACCCAAATTCGATCAACATGCCACCAGATTCCATGAGAAATATTGCTAGACTGAAAAAAGACGCGGTTGATTATTCTAGTGACAGCAATGGTGATGATGATATGGACGATGAAAGTGAGTTTGATGTGGACCGGTTTATTATGGAAAGGTTATCCTTAGATGTATCGAAGTTGGAAGTTCAACTGGAAACACCGAAAATTTCCTCTCCGAACAAAATTTTGTCTCCAAGAAGGATATGGCGAGCCAGATAA 1911 0.4155 MNSIPSPPSATLFTQSKNPNHLFKFNLKVPILPFHSSSSNLTTPCCTLRDSTSSVLDKNAPTSEQSTLNYIPPKDSNFEGTLVVRRPVKEFSGQNSDEKEEQDNYETEEEEPKASSIDAGLTKFAKKMPMFEPGRVESDSEEKPLTVNLDLALYKAKVLTRNFRYEEAEEILQQCLCYWPEDGRPYVALGKVFSKQSKTSQAREVYEKGCQATQGENAYIWQCWAVLENRMGNVRRARKLFDAATVADKKHVAAWHGWAVLELKQGNIQKARSLLSKGLQYCGQNEYIYQTLALLEVKANRYQQARYLFNQATKCNPKSCASWLAWAQMEVEQENNRTARKLFENAVQASPKNRFAWHVWGVFEANLGKIEKGKKLLKIGHALNPRDAVLLQSLALIEYKHSSANRARVLFRRASELDPKHQPVWFAWGWMEWKEGNLNTARELYKKALSIDPNSESAARCLQAWGVLEQRVGDLSTARRLFRSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDSLKRLLKMDPNSINMPPDSMRNIARLKKDAVDYSSDSNGDDDMDDESEFDVDRFIMERLSLDVSKLEVQLETPKISSPNKILSPRRIWRAR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04318 636 Pfam Tetratricopeptide repeat 230 276 - -
Tsu04g04318 636 Gene3D Tetratricopeptide repeat domain 284 580 IPR011990 GO:0005515
Tsu04g04318 636 ProSiteProfiles TPR repeat profile. 286 319 IPR019734 GO:0005515
Tsu04g04318 636 ProSiteProfiles TPR repeat profile. 422 455 IPR019734 GO:0005515
Tsu04g04318 636 Pfam Tetratricopeptide repeat 424 454 IPR013105 -
Tsu04g04318 636 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 15 634 IPR044624 GO:0003729|GO:0006397
Tsu04g04318 636 MobiDBLite consensus disorder prediction 51 72 - -
Tsu04g04318 636 Coils Coil 88 108 - -
Tsu04g04318 636 SMART hat_new_1 300 332 IPR003107 GO:0006396
Tsu04g04318 636 SMART hat_new_1 473 505 IPR003107 GO:0006396
Tsu04g04318 636 SMART hat_new_1 232 264 IPR003107 GO:0006396
Tsu04g04318 636 SMART hat_new_1 436 471 IPR003107 GO:0006396
Tsu04g04318 636 SMART hat_new_1 402 434 IPR003107 GO:0006396
Tsu04g04318 636 SMART hat_new_1 266 298 IPR003107 GO:0006396
Tsu04g04318 636 SMART hat_new_1 197 230 IPR003107 GO:0006396
Tsu04g04318 636 SMART hat_new_1 334 366 IPR003107 GO:0006396
Tsu04g04318 636 MobiDBLite consensus disorder prediction 87 116 - -
Tsu04g04318 636 SUPERFAMILY TPR-like 123 398 IPR011990 GO:0005515
Tsu04g04318 636 Gene3D Tetratricopeptide repeat domain 139 282 IPR011990 GO:0005515
Tsu04g04318 636 SMART tpr_5 149 182 IPR019734 GO:0005515
Tsu04g04318 636 SMART tpr_5 183 216 IPR019734 GO:0005515
Tsu04g04318 636 SMART tpr_5 252 285 IPR019734 GO:0005515
Tsu04g04318 636 SMART tpr_5 459 492 IPR019734 GO:0005515
Tsu04g04318 636 SMART tpr_5 218 251 IPR019734 GO:0005515
Tsu04g04318 636 SMART tpr_5 320 353 IPR019734 GO:0005515
Tsu04g04318 636 SMART tpr_5 422 455 IPR019734 GO:0005515
Tsu04g04318 636 SMART tpr_5 354 387 IPR019734 GO:0005515
Tsu04g04318 636 SMART tpr_5 388 421 IPR019734 GO:0005515
Tsu04g04318 636 SMART tpr_5 286 319 IPR019734 GO:0005515
Tsu04g04318 636 SUPERFAMILY TPR-like 346 507 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04318 - - mtr:MTR_4g122060 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04318 04 51172889 51177721 Tsu04g04318 04 51172889 51177721 ECH