Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04309 ATGGCGAACAAGTACAACATGAAGAATCCCGCCGTGAAGCGGATTCTTCAAGAGGTCAAAGAGATGCAATCTAATCCTTCTGATGATTTCATGAGCCTTCCTCTCgaggaaaatatatttgaatggCAATTTGCGATTAGGGGAGCTCGTGAAACTGAATTTGAAGGTGGTATTTATCATGGAAGGATACAGTTACCAGCTGAATATCCATTCAAACCTCCTTCATTTATGTTGTTAACACCTAATGGTCGTTTTGAGACTCAAACTAGGATTTGTTTGAGCATATCAAATCATCACCCTGAGCACTGGCAGCCTTCGTGGAGCGTACGGACTGCTCTAGTTGCACTGATTGCATTCATGCCCACCAACCCAAATGGTGCATTGGGTTCATTAGACTACAAGAAAGAAGATAGACGAGCCTTGGCCATTAAATCCCGTGAAGCATCTCCAAAATTTGGAACTCCTGAACGTCAAAAACTAATTGATGAGATACATGAGTATATGCTAAGCAAGGCAATCCCGGTTGAGGAACCGAGCCCTCCACAGGCTTCTGAAGAACCCAAAAATGAGGAGGCTGAGACCCAAGTTACTTTGGAAAATACTGAGGCTCTACCTGCAGGAGAGGCGATTCCAGATCAAACAGGTGACAGAATAGTTGAAGAACAAGAAGTCCCTGTCAACGTTAATCCTAACCCAGCAGGAGTTGAAGCGTCAAATGAGATTCCATCCGGTGTCTCAACCAATCAGTTGCCCCGAACGTCAGATACAAGGGTTCAAAATCTGAAACCAGAGATAAGGGTTCAAAAGCCTGATGACCGATTGTTCACTCTAGCAGCTATTGGACTTGCTATAGCAATTATGGTTCTTttgctgaagaaattcattaAATCTACAGAACATGCAGCAGTTTTCATGGATGGATCTTAG 927 0.4207 MANKYNMKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGARETEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTRICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEDRRALAIKSREASPKFGTPERQKLIDEIHEYMLSKAIPVEEPSPPQASEEPKNEEAETQVTLENTEALPAGEAIPDQTGDRIVEEQEVPVNVNPNPAGVEASNEIPSGVSTNQLPRTSDTRVQNLKPEIRVQKPDDRLFTLAAIGLAIAIMVLLLKKFIKSTEHAAVFMDGS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04309 308 MobiDBLite consensus disorder prediction 232 257 - -
Tsu04g04309 308 CDD UBCc 12 151 IPR000608 -
Tsu04g04309 308 Gene3D Ubiquitin Conjugating Enzyme 1 176 IPR016135 -
Tsu04g04309 308 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Tsu04g04309 308 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 308 - -
Tsu04g04309 308 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Tsu04g04309 308 MobiDBLite consensus disorder prediction 227 257 - -
Tsu04g04309 308 PANTHER BNAC01G21910D PROTEIN 6 308 - -
Tsu04g04309 308 SUPERFAMILY UBC-like 11 132 IPR016135 -
Tsu04g04309 308 SMART ubc_7 13 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04309 Tsu-Chr4 51124339 51126961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04309 4 306 Miscellaneous Gene Families AT3G17000 65.260 5.48e-134 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04309 K10578 - gmx:100804054 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04309 04 51124339 51126961 Tsu04g04309 04 51124339 51126961 ECH