Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04298 ATGCAAtcctctctctcactctctttcTCTCCCACCTCATCTGCCACCACAATCTCCAGATCACATCACTCTTTTCCACTCTCCACCGGCACTAAACCTCTCAATCTACGTTTCTGCGGTTTAAGACGCGAGGCCTTGGGTTTAGGTTTTTCAACTTCTCTCAACCGTAATCTCCACCAGCAACAGCAGCTTCCCCGTCGTCAATACTCCGCCGTAGTATCCGCTGCGCGCTCTGACAATGGCAGTAGTTCTGGATCATCCTTTGATTACgatttgttgattattggtGCTGGTGTTGGTGGTCACGGTGCTGCTCTTCACGCTGTCGAAAAGGGATTGAAAACAGCTATAGTGGAAGGAGACGTGGTTGGAGGGACATGTGTAAACAGAGGCTGTGTTCCTTCGAAAGCTCTTTTGGCTGTTAGCGGTCGTATGCGGGAACTAAAGAGTGATCATCACTTGAAATCCTTAGGCTTACATGTTTCTTCTGCCGGGTATGATAGACAAGGAGTAGCTGATCATGCTAATAATCTTGCTACGAAAATCCGTAGTAATTTGACAAACTCCCTAAAAGCGATAGGAGTAGACATACTTACTGGTTTTGGTACTGTAGTGGGTCCTCAAAAGGTGAAGATTGGCTCTTCGGACAAAATAGTAACTGCAAAAGATATCATCATTGCCACTGGTTCTGTTCCTTTTGTTCCTAAGGGTGTTGAAGTTGATGGGAAGACTGTAATTACCAGTGACCATGCACTCAAACTGGAGTCTGTTCCTGAATGGATAGCAATTGTAGGAAGCGGGTATATTGGCCTTGAATTCAGTGATGTATATACTGCACTTGGAAGCGAGGTTACTTTTGTTGAAGCTTTAGATCAGCTTATGCCTGGATTTGATCCTGAAATCAGCAAGCTGGCTCAAAGGGTTCTTGTAAATCCCCGTAATATTGATTATCATACTGGAGTGTTTGCATCCAAGATTACGCCTGCAAGGGATGGGAAACCTGTCTTGATTGAGCTTATTGATGCAAAAACTAAGGAACCAAAGGACACTTTGGAGGTTGATGCTGCACTAATAGCAACTGGAAGGGCTCCATTCACAGAAGGTCTAGGACTGGAGAATGTTGATGTGGCAACACAGCGAGGTTTTATTCCTGTGGATGAGCGCATGCGTGTAATTGATGCTAATGGCAAGCTGGTACCTCATTTATACTGTATTGGAGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGTGGTTGAACAAGTCACCGGAAGAGATCATGTGCTCAATCATTTAAGTATCCCAGCTGCATGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGAGAAAGGTGAAAAGGAGGGATTTGAAGTCAGTGTTGCTAAAACAAGTTTTAAAGCTAACACAAAAGCCCTTGCAGAAAATGAAGGGGAGGGACTTGCCAAGTTGATATACAGACCTGACAATGGAGAGATCCTAGGAGTTCATATATTTGGTTTGCATGCAGCAGATCTTATTCATGAAGCATCCAATGCTATAGCGTTAGGAACACGTATTCAGGACATAAAACTTGCCGTTCATGCACATCCAACTCTGTCTGAGGTTCTTGATGAACTATTTAAATCAGCAAAGGTTAAAGAACACGCTTCTATCCCAGTAAGTGAACCAGTTGCAGTCTAA 1722 0.4309 MQSSLSLSFSPTSSATTISRSHHSFPLSTGTKPLNLRFCGLRREALGLGFSTSLNRNLHQQQQLPRRQYSAVVSAARSDNGSSSGSSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSLGLHVSSAGYDRQGVADHANNLATKIRSNLTNSLKAIGVDILTGFGTVVGPQKVKIGSSDKIVTAKDIIIATGSVPFVPKGVEVDGKTVITSDHALKLESVPEWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEISKLAQRVLVNPRNIDYHTGVFASKITPARDGKPVLIELIDAKTKEPKDTLEVDAALIATGRAPFTEGLGLENVDVATQRGFIPVDERMRVIDANGKLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVLDELFKSAKVKEHASIPVSEPVAV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04298 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 90 422 IPR023753 GO:0016491
Tsu04g04298 573 SUPERFAMILY FAD/NAD(P)-binding domain 84 431 IPR036188 -
Tsu04g04298 573 PANTHER DISULFIDE OXIDOREDUCTASE 16 564 - -
Tsu04g04298 573 Gene3D - 440 564 IPR016156 GO:0016491|GO:0050660
Tsu04g04298 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 92 111 - -
Tsu04g04298 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
Tsu04g04298 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 260 278 - -
Tsu04g04298 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 353 369 - -
Tsu04g04298 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 387 409 - -
Tsu04g04298 573 Gene3D - 91 423 IPR036188 -
Tsu04g04298 573 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 90 559 IPR006258 GO:0004148|GO:0050660
Tsu04g04298 573 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 440 554 IPR016156 GO:0016491|GO:0050660
Tsu04g04298 573 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 124 134 IPR012999 GO:0016668
Tsu04g04298 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 91 113 - -
Tsu04g04298 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 123 138 - -
Tsu04g04298 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 224 233 - -
Tsu04g04298 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 260 285 - -
Tsu04g04298 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 354 368 - -
Tsu04g04298 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 402 409 - -
Tsu04g04298 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 437 458 - -
Tsu04g04298 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 506 521 - -
Tsu04g04298 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 528 548 - -
Tsu04g04298 573 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 441 552 IPR004099 GO:0045454
Tsu04g04298 573 MobiDBLite consensus disorder prediction 1 26 - -
Tsu04g04298 573 Gene3D - 233 360 IPR036188 -
Tsu04g04298 573 PIRSF Hg-II_reductase_MerA 49 555 IPR001100 GO:0016491
Tsu04g04298 573 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 16 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04298 Tsu-Chr4 51067142 51073308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04298 1 564 Acyl Lipid Metabolism Gene Families AT3G16950 83.216 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04298 K00382 - gmx:100809578 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04298 04 51067142 51073308 Tsu04g04298 04 51067142 51073308 ECH