Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04290 ATGAATCTGCCACTACCAAATAAGGAGACCTTGTCAAGACACTCATTTTTAGGACCAAATGGTCTTCGGGGACAATGGCTTGGACCTAGTGCAGAAATTAAGGTTCAATATCCAAGCAGTAATGATCTTACGCATGCCATTGCCAAGGATTCAAGCACTGTAAAGTATGACCTTGTTGGCATTAAAGATGGTGACCAAGGACCACTTACATCCACAATGGATTCAATTCTTTCCTTGGATGATGGTAGATGGTCGCATCCTATTGACGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGGGAGGACTACTTACAGTTGCTCAACATCAAGCAACCTTTGCCTCCTCCTGTTCTTGCTCAGGTTCACCCAGAACGTGCCTCTATTCCTCCTTCAAAAATTGCAGATCCAAGGCCAGGACCGGCGAAATCTTCTAATGATTCTGGACATGGTCCCACTACATATCAACACCTACACATTCCTGTAAAAATGATGGAAGATTTTCTGAGATTGGCTTCAGCAAACACGCgaaagaatttagagacttgtGGTGTTCTTGCAGGGTCTCTGAAAAACAGGGTTTTTCATATCACAACACTTATAATCCCAAAGCAGGAATCGACTTCTGACTCGTGTGAAACGTTGGATGAAGGAGAAATATTTGAAGTTCAAGACCGCTTGTCGCTTTTTCCTCTGGGTTGGATACATACTCACCCGTCTCAGACGTGTTTCATGTCGTCCGTGGATCTGCACACGCATTACTCATATCAGATCATGTTACCGGAGGCAATTGCAATAGTGATGGCTCCTACAGATACAGAAAGTCCACATGGCATATTTCATCTGTCTGATCCAGGTGGTGTTTCTGTAATTCGTAACTGTCAACAACGTGGATTTCATCCCCATGAAGAGCCTTCCGATGGAAGTCCAATATATGAGCATTGCTCTCATGTCTATATGAATGCCAACATGAAGTTTGATGTTATTGACCTTCGAGAGAAATGA 1002 0.4261 MNLPLPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSNDLTHAIAKDSSTVKYDLVGIKDGDQGPLTSTMDSILSLDDGRWSHPIDESCSPVVTESREDYLQLLNIKQPLPPPVLAQVHPERASIPPSKIADPRPGPAKSSNDSGHGPTTYQHLHIPVKMMEDFLRLASANTRKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCETLDEGEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTESPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANMKFDVIDLREK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04290 333 SMART pad1_6 156 284 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu04g04290 333 PANTHER AMSH-LIKE PROTEASE 1 331 - -
Tsu04g04290 333 CDD MPN_AMSH_like 154 331 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Tsu04g04290 333 ProSiteProfiles MPN domain profile. 157 287 IPR037518 -
Tsu04g04290 333 SUPERFAMILY JAB1/MPN domain 156 287 - -
Tsu04g04290 333 MobiDBLite consensus disorder prediction 127 153 - -
Tsu04g04290 333 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 153 260 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu04g04290 333 Gene3D Cytidine Deaminase, domain 2 141 333 - -
Tsu04g04290 333 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 1 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04290 Tsu-Chr4 51007711 51013182 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04290 K11866 - gmx:100812784 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04290 04 51007711 51013182 Tsu04g04290 04 51007711 51013182 ECH