Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03847 ATGAATTCTTTAAAGAGTAGAGAAGCTGAGATAAGTGTTCACAAGCATGAAGTTGGTGAGAGCTCGGTTTCCGTTGCCAGTGATGAAGTTGCTGAGGCCAAGGCACAGCCTAATGCCAAAAGGGCCAGGCTGCAGAAGGAACTAACTTTTCAGGACTTGTATGAAAACCAAGAGTTGCTTGACGAGGATGATGAGGAGGATGGTGATTGGGACCCATCTCAGTTGCAGAAGTGTGTTGAAGTCATCAAGTGGTTGTGTAAAAATTGTACTGTGGCTAACATAAACGATGATGTTTTTTGCAGAGTATGTGGGGAGCATAAAGATTCTAAAATACTGAGCCTTGGGCATTTTGCATCTCCCTTTGCACCAGATGAAGATCTCAATGAGATCCAGCCAACCATAAAAGGACTGAGAGATATTGACCCACGGGAATCAGCAGCAAACAGTTCTACGGCAATTGGCTTTGATGAAAGAATGCTGTTGCATGCGGAAGTTGAAATGAAACCGCATCCACACCCTGAAAGGCCAGATCGACTTCGAGCAATTGCTGCTAGTCTTGCCAGAGCTGGTATATTTCCAGGAAGATGCTGTTCAATTCCTGCTAGAGAAATCACTCAAGAAGAACTTATGATGGTTCATTCTTCGGAGCATATTGAATCTGTGGAAGTTACAAGCAAGTTAATGTCTAGTTACTTCACTTCTGACACATACGCCAATGAGCATTCAGCATGTGCTGCTAGGTTGGCAGCTGGGTTATGCGCTGATCTGGCATCGGCAATTGTTTCTGGACGTGCCAAGAATGGATTTGCTCTGGTTAGACCTCCTGGTCATCACGCCGGTGTAAAAAATGTGATGGGGTTTTGCCTTCACAATAATGCTGCAGTGGCAGCATTGGCGGCTCAGTCTGCAGGGGCTAGGAAGGTGCTCATTTTAGATTGGGATGTTCATCATGGAAATGGCACACAGGAAATATTTGAGCAAAACAATTCAGTCTTGTATATATCATTGCATAGGCATGAGGGTGGAACGTTTTATCCTGGTACCGGAGGTGCTCATGAGGTTGGTTATATGGGTGCAGAAGGTTTCTGTGTGAATATTCCATGGAGTCGAGGTGGTGTTGGTGATAATGATTACATTTTTGCATTTCAGCATGTTGTACTTCCTATAGCTTCCGAATTTGCTCCAGATTTTACCATAATATCAGCAGGATTTGATGCTGCTAGAGGTGATCCCCTAGGTGGTTGTGATATTACTCCTTCTGGCTATGCACAGATGACACACATGTTGAATGCCCTTTCTGGTGGAAAAATGCTTGTTATTCTTGAGGGGGGGTTTGTGGCTCATACCTTTCTCAACTGTTCAGTTTTCAATTAG 1374 0.4418 MNSLKSREAEISVHKHEVGESSVSVASDEVAEAKAQPNAKRARLQKELTFQDLYENQELLDEDDEEDGDWDPSQLQKCVEVIKWLCKNCTVANINDDVFCRVCGEHKDSKILSLGHFASPFAPDEDLNEIQPTIKGLRDIDPRESAANSSTAIGFDERMLLHAEVEMKPHPHPERPDRLRAIAASLARAGIFPGRCCSIPAREITQEELMMVHSSEHIESVEVTSKLMSSYFTSDTYANEHSACAARLAAGLCADLASAIVSGRAKNGFALVRPPGHHAGVKNVMGFCLHNNAAVAALAAQSAGARKVLILDWDVHHGNGTQEIFEQNNSVLYISLHRHEGGTFYPGTGGAHEVGYMGAEGFCVNIPWSRGGVGDNDYIFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGGCDITPSGYAQMTHMLNALSGGKMLVILEGGFVAHTFLNCSVFN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03847 457 SUPERFAMILY Arginase/deacetylase 148 448 IPR023696 -
Tsu04g03847 457 PANTHER HISTONE DEACETYLASE 13 449 - -
Tsu04g03847 457 ProSitePatterns Zinc finger RanBP2-type signature. 84 103 IPR001876 -
Tsu04g03847 457 PRINTS Histone deacetylase superfamily signature 395 405 IPR000286 -
Tsu04g03847 457 PRINTS Histone deacetylase superfamily signature 274 297 IPR000286 -
Tsu04g03847 457 PRINTS Histone deacetylase superfamily signature 307 322 IPR000286 -
Tsu04g03847 457 MobiDBLite consensus disorder prediction 1 38 - -
Tsu04g03847 457 Gene3D Histone deacetylase domain 144 455 IPR037138 -
Tsu04g03847 457 Pfam Histone deacetylase domain 172 448 IPR023801 -
Tsu04g03847 457 PANTHER HISTONE DEACETYLASE-RELATED 13 449 - -
Tsu04g03847 457 CDD HDAC_classII 172 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03847 Tsu-Chr4 47346893 47354631 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03847 - - mtr:MTR_4g111985 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03847 04 47346893 47354631 Tsu04g03847 04 47346893 47354631 ECH