Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03843 ATGGATGAAAACTTCGATGGTTTCAACAATAAACTTCCCGAACTCAAATTAGATTCTAAGCAAACACAAGGGTTTCTGTCATTTTTCAAAACCCTACCCGATGACCCGAGGGCCATTAGGTTTTTTGATCGTCGGGATTACTATACTGCCCATGGGGAGAACGCAACGTTCATTGCCAAAACATACTATCACACTACTACTGCTTTGCGACAGTTGGGTAGTGGATCAAATGCTCTTTCCAGTGTGAGTGTCAGTCGGAACATGTTTGAAACAGTTGCCCGTGATCTTCTTTTGGAGAGAACAGACCATACACTTGAGGTCTATGAGGGCAGCGGCTCTAACTGGAGACTGGTCAAAAGTGGCACACCTGGTAATATTGGCAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAGATGCAAGATTCTCCAGTTGTTGTTGCACTGTCACTTAACTTACGTGAAAGTGGGTGCACCATTGGATTAGGATTTGTTGATCTAACTAAGAGACTACTTGGGATGGCTGAATTCCTTGATGACAGTCACTTCACGAATGTGGAGTCAGCATTGGTTGCTCTTGGTTGCAAAGAGTGCCTTGTGCCTATTGAGCGTGGAAAATCTATTGAATATAAAATGTTGTGTGATGTTTTGACTAAATGTGGCGTGATGCTAACTGAGAGAAAGAAATCCGAGTTTAAGACTAGAGATCTGGTACAGGATCTTGGCAGGCTTGTCAAAGGTTCTATTGAAGCAGTTCAAGATTTAGTATCTGGATTTGAATTTGCACCAGGTGCTTTGGGGGCACTGCTATCTTATGCAGATTTACTTGCAGACGAAAGCAATTATGAAAATTATACTCTGCGTAGGTGCAATCTTGACAGTTACATGAGGTTAGATTCTGCAGCCATGAGGGCACTTAATGTCTTAGAAAGCAAAACTGATGcaaacaaaaatttcagtttGTTTGGTCTCATGAATAGGACATGTACAGCTGGAATGGGAAAACGGTTATTGCACATGTGGCTAAAGCAGCCATTAGTAGATGTAAAAGAAATTAACTCCAGGTTGGATGTAGTACAAGCATTTGTAGAGGACACTGTGCTTCGCCAAGATCTGAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGACtggtgcacaatcttcagaagcaAAGAGCTGGTCTGCAACATGTTGTTAAACTTTATCAGTCAAGTATAAGACTGCCTTACATTAAAAGTGCTCTGGAAAGGTATGATGGACAGTTTTCTTCAATGATGAAGAGCAGGTATTTGAAAGATTTGGAGTTATGGACTGGTGCTGATCGcctaaataaatttattgagcTAGTAGAAACTGCTGTTGACCTTGATCATCTGGAGAGTGGGGAATACATGATTTcttcaagttatgactctgcaCTAACTGAACTTAAGGAGAAGCAAGAATTACTAGATAGCCAAATACATGACTTGCACAGGCAAACTGCTGTTGATCTTGATCTGGCTGTAGATAAGGCATTAAAGTTAGATAAGGGCACACAATTTGGACATGTTTTTAGAATCACAAAGAAGGAGGAGCCGAAAATAAGGAAGAAGCTCAACACCCAGTTTATTGTGCTGGAAACCCCAACTTTTTCTGAGGTGTTTGAATCTTTAGCTGAATTAATTTCAGAATTGGACGTGTTACTAAGTTTTGCTGATTTGGCTTCTAGTTGTCCTACTCCTTATACAAGGCCCGACATCACCTCATCGGACGAAGGAGATATTATCTTAGAAGGTAGCAGACACCCCTGTGTGGAGGCACAAGATTGGGTGAATTTTATACCAAATGATTGTAAGCTTATCAGAGGAAAAAGTTGGTTTCAAATAATAACAGGGCCTAACATGGGTGGGAAATCAACATTCATCCGGCAGGTGGGCGTGAATATTTTGATGGCGCAAGTTGGTTGCTTTGTTCCATGTGACAAAGCCAGCATATCTGTTCGTGATTGCATTTTTGCTCGTGTTGGTGCTGGTGACTGCCAACTTCGTGGAGTTTCTACCTTTATGCAAGAAATGCTCGAAACTGCATCAATATTGAAAGGAGCTACCGACAAGTCCTTGATAATCATTGATGAGTTGGGGCGTGGGACATCAACTTACGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCACATAGTTGACGTGATGAAAGCACCTACTTTATTTGCTACTCACTTTCATGAACTGACTGCATTAGCCCATGAAAATGATCCACATAAACAAATTGTTGGTGTGGCAAATTACCATGTTAGTGCACATATTGATGCATCTACTCGTAAGCTAACTATGCTATACAAGGTTGAACCAGGAGCGTGTGATCAGAGTTTTGGTATTCATGTCGCTGAGTTTGCAAACTTCCCTGAAAGTGTCGTCGCCCTAGCTAGAGAAAAGGCAGCAGAATTGGaagatttttcttcttctgcaaTTTCCTTAATTGATTCTTCTACAGAAGAGGTGGGTTCTAAGCGTAAGAGAGCATTTGAACCTGATGAGATTTCTAAAGGGGCTGCAAAGGCTCGCCAAATTCTTGAATCGTTTGTTGCTCTTCCACTAGACACCATGGACAAAACACAAGCTTTGCAAGAAGTTAAGAAGTTGAAAGATAATTTAGAGAAGGATGCACAAAACTGTCACTGGTTGCAAAAATTCTTGTAG 2700 0.4 MDENFDGFNNKLPELKLDSKQTQGFLSFFKTLPDDPRAIRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGSGSNALSSVSVSRNMFETVARDLLLERTDHTLEVYEGSGSNWRLVKSGTPGNIGSFEDVLFANSEMQDSPVVVALSLNLRESGCTIGLGFVDLTKRLLGMAEFLDDSHFTNVESALVALGCKECLVPIERGKSIEYKMLCDVLTKCGVMLTERKKSEFKTRDLVQDLGRLVKGSIEAVQDLVSGFEFAPGALGALLSYADLLADESNYENYTLRRCNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDVKEINSRLDVVQAFVEDTVLRQDLRQHLKRISDIERLVHNLQKQRAGLQHVVKLYQSSIRLPYIKSALERYDGQFSSMMKSRYLKDLELWTGADRLNKFIELVETAVDLDHLESGEYMISSSYDSALTELKEKQELLDSQIHDLHRQTAVDLDLAVDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETPTFSEVFESLAELISELDVLLSFADLASSCPTPYTRPDITSSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVMKAPTLFATHFHELTALAHENDPHKQIVGVANYHVSAHIDASTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSSAISLIDSSTEEVGSKRKRAFEPDEISKGAAKARQILESFVALPLDTMDKTQALQEVKKLKDNLEKDAQNCHWLQKFL 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03843 899 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 24 885 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Tsu04g03843 899 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 Gene3D - 295 576 - -
Tsu04g03843 899 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 885 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Tsu04g03843 899 Coils Coil 371 391 - -
Tsu04g03843 899 Gene3D MutS, connector domain 123 292 IPR036678 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 SUPERFAMILY DNA repair protein MutS, domain III 298 571 IPR036187 -
Tsu04g03843 899 SMART DNAend 315 602 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 Gene3D - 577 896 IPR027417 -
Tsu04g03843 899 Coils Coil 871 891 - -
Tsu04g03843 899 Gene3D DNA repair protein MutS, domain I 9 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 Pfam MutS domain II 144 284 IPR007860 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 CDD ABC_MSH2_euk 590 817 - -
Tsu04g03843 899 Coils Coil 474 494 - -
Tsu04g03843 899 Pfam MutS domain III 301 566 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 Pfam MutS family domain IV 470 547 IPR007861 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 PIRSF MSH2 8 544 IPR011184 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 PIRSF MSH2 535 899 IPR011184 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 Pfam MutS domain V 622 817 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 ProSitePatterns DNA mismatch repair proteins mutS family signature. 700 716 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu04g03843 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 818 IPR027417 -
Tsu04g03843 899 SMART mutATP5 619 814 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03843 Tsu-Chr4 47305776 47314923 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03843 K08735 - gmx:100792272 1561.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03843 04 47305776 47314923 Tsu04g03843 04 47305776 47314923 ECH