Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03827 ATGCTGCAAAACTCAAGAATACTGCAAACTTCTCCTCAACCATTCAATGCTCCACCTCATACATCAGCACCATCACCTTCATCTTTCCAACTATTACCCACCACCCCACATTTTCCAATCCTCAAACAGCAATGCAGATTATCGCGTAGAGAGCTCACAATCTACAGCAACTCTTGCTTGCTGCTTCTTTTGGGTGATGGATCCAGAGCAAGAGCAGAAGATGATGTAACCAACAGTGACCAACAGGGAGAGAATTTGACTAATACTCTCAGTTGCACTGAAAGAAAACCAACAAAACAAGTTTTCTTTGACATATCTGTTGATCGCGAACCAGTTGGTCGCGTTACTATAGAGCTCTATGGAGACGATGTCCCAGCAGGTGTTGAGAGGTTTAGTAAGATTATCAGTGGAGCTGCCGGTATAAGCTACAGAAGGAAAGAGTTTGTCAAAATCATGCCGAATTACGTCCAGCATGGTGGCCTTAGATCCTATGGGGTGGATGCGGAACTTGCTAACAAGACAGGAAGCAATTTGGCTGCTGAAAATCTTGTTGAGGAATGGGAGAGAATGTATGAGAAATGCCCTGGGACTAAAAATGTGGCTGGAAGTGTAAGCATTATTGTGAGAGATCCATCAAAACCACCCCCTAAGTTTAAACTGGTTGCAAGACTAGGAAAACTTGAGATTGATCAAGAAGAAGTTGGAACAGATCCTAATGGGACAGAATTTGTCATTGCGACCAAGGATTCGCCGGAATTGGATACTTCGTCTCTGGTAATTGGAAGGGTGGTAGAAGGTATTGAGGTTGTGCAGAAGATTAGTCAGGTGAAAACTGTACAAGAGAATACGAGCTCTCCATATTTCAAGGTGGCAAAACTTATAGGAGACAAGAGGGCTGTTGTAGCAGAAAGGGGATTCAACCGCCCTTACTCCAAAGTTGTCGTTACAAACTGTGGTGTAATACAGTAG 969 0.4355 MLQNSRILQTSPQPFNAPPHTSAPSPSSFQLLPTTPHFPILKQQCRLSRRELTIYSNSCLLLLLGDGSRARAEDDVTNSDQQGENLTNTLSCTERKPTKQVFFDISVDREPVGRVTIELYGDDVPAGVERFSKIISGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDAELANKTGSNLAAENLVEEWERMYEKCPGTKNVAGSVSIIVRDPSKPPPKFKLVARLGKLEIDQEEVGTDPNGTEFVIATKDSPELDTSSLVIGRVVEGIEVVQKISQVKTVQENTSSPYFKVAKLIGDKRAVVAERGFNRPYSKVVVTNCGVIQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03827 322 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 103 286 IPR002130 GO:0000413|GO:0003755
Tsu04g03827 322 Gene3D - 89 322 IPR029000 -
Tsu04g03827 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Tsu04g03827 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 227 242 IPR002130 GO:0000413|GO:0003755
Tsu04g03827 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 242 254 IPR002130 GO:0000413|GO:0003755
Tsu04g03827 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 255 270 IPR002130 GO:0000413|GO:0003755
Tsu04g03827 322 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 102 320 IPR002130 GO:0000413|GO:0003755
Tsu04g03827 322 SUPERFAMILY Cyclophilin-like 97 321 IPR029000 -
Tsu04g03827 322 CDD cyclophilin 102 290 - -
Tsu04g03827 322 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 1 322 IPR044185 -
Tsu04g03827 322 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03827 Tsu-Chr4 47154939 47156089 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03827 K03768 - gmx:100796313 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03827 04 47154939 47156089 Tsu04g03827 04 47154939 47156089 ECH