Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03817 ATGTCAAAGGTTAAAGTTGATCAACTTAATCAATTAAGAGAAATTTTCAAGAGATTTGACATGGATTCAGATGGAAGCCTAACAATATTAGAGTTAGCGGCACTTATTCGTTCGTTAGGTTTAAAACTTTCAGGGGATGAAGTTCAAATCCTGTTGGCTAAAATGGACTCGAACGGAAACGGTTTTGTTGAGTTTGATGAATTGGTTGGAGCTATAATGCCAAACATGAATGCGGAAGTATTGGTGAATCAAGAACAACTTATAGGTGTGTTCAAGTGTTTTGATCGCGATGGAAATGGATTTATTTCGGCTGCTGAATTGGCTGGAGCAATGGCTAAAATGGGTCAGCCACTTACTTATAAAGAGCTTATTGAGATGATTAAAGAAGCTGATATGGATGGTGATGGTGTTATTAGTTTTAGTGAGTTTGCTACTATTATGGCTCGTTCTGCTTCTGATTTATTAGGAGGGTTTGGTTATAGAAACAAAACACATTCATTTCAATTGTAA 510 0.3627 MSKVKVDQLNQLREIFKRFDMDSDGSLTILELAALIRSLGLKLSGDEVQILLAKMDSNGNGFVEFDELVGAIMPNMNAEVLVNQEQLIGVFKCFDRDGNGFISAAELAGAMAKMGQPLTYKELIEMIKEADMDGDGVISFSEFATIMARSASDLLGGFGYRNKTHSFQL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03817 169 SUPERFAMILY EF-hand 5 149 IPR011992 -
Tsu04g03817 169 Gene3D - 78 156 - -
Tsu04g03817 169 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Tsu04g03817 169 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Tsu04g03817 169 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Tsu04g03817 169 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Tsu04g03817 169 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Tsu04g03817 169 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Tsu04g03817 169 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 156 - -
Tsu04g03817 169 CDD EFh 11 73 IPR002048 GO:0005509
Tsu04g03817 169 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Tsu04g03817 169 CDD EFh 86 148 IPR002048 GO:0005509
Tsu04g03817 169 Gene3D - 1 77 - -
Tsu04g03817 169 SMART efh_1 11 39 IPR002048 GO:0005509
Tsu04g03817 169 SMART efh_1 122 150 IPR002048 GO:0005509
Tsu04g03817 169 SMART efh_1 47 75 IPR002048 GO:0005509
Tsu04g03817 169 SMART efh_1 86 114 IPR002048 GO:0005509
Tsu04g03817 169 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Tsu04g03817 169 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Tsu04g03817 169 PANTHER CALCIUM BINDING PROTEIN 3 156 - -
Tsu04g03817 169 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03817 Tsu-Chr4 47049824 47050552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03817 7 156 EF-hand Containing Proteins AT1G18530 78.000 2.85e-84 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03817 K13448 - gmx:100795885 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03817 04 47049824 47050552 Tsu04g03817 04 47049824 47050552 ECH