Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03799 ATGCCTACCATCAGTGTAGGGCGAGATAATCTTTTTGCGGCTCTTGGAAGAACTTACACACAAGAGGAATTTGAAGACGTATGCTTCAGTTTTGGGATTGAGCTTGATGATGTTACTACGGAAAAAGCAATAGTGAGAAAAGAGAAGCATTTGGAAGAAGAAGCTGATGAGGATGAAGAAGTTATCTACAAAATTGAAATTCCTGCAAATAGaTATGACCTACTCTGCCTTGAAGGACTGGCTCAAGCCCTCCGAGTTTTCGGTGGGGTCCAGGAAATCCCTACTTACAAATTGGCTGACATTAGTAAGGATGCAATGCTTAAAATGCATGTGAAGCCAGAGACATCTCTGATTCGTCCCTTTGTTGTATGTGCCGTACTAAGAGGTTTAACTTTTGATAAAGCGAGATACAACAGCTTTATTGATCTACAAGACAAGCTGCACCAAAATATTTGTCGGAGAAGAACCCTTGTTGCCATTGGCACTCATGATCTGGATAAATTAGAGGGTCCTTTTACCTATGAGGCTTTACCACCTTCAAGTATTAACTTTACACCTCTGAAACAGGAAAGGAGCTTCAGGGCTGATGAGCTCATGGAGTTCTACAAAtCAGATTTGAAACTGAAGAAATTCTTACATATAATCGAGGACTCTCCGGTTTATCCTGTTATATATGATAGTAAGAgAACTGTTTTATCGTTACCCCCAATTATCAATGGTGCACATTCGGCCATAACTTTGGAGACGAAGAACGTATTTATTGAATGCACTGCTACGGATCTGACAAAGGCGAAAGTTGTTTTAAATACAATGGTAACAGCCTTCGCGGAATATTGTGAAAATAAGTTTGTTATTGAACCAGTTGAAGTGATTTCTTCTGATGGAAAATCTCACATATACCCTGATTTATCCATCTACAATATGGAAGTTGACCTGTCTTACATTACTGGACAGATTGGAGTATCGTTGGAGGCAGAAGAGGTTACCAAGTTCTTATACCGGATGCAATTGCATGCCAAGCAATCTTCTGACAAAAAACACTCCAACATAATTGTATCGGTACCTCCTAATAGAAGTGATGTTATTCATCCAATCGATGTTGTGGAGGATGTTGCAATAGCTTATGGATTCAATGCTATTATGGACCAAGCAATAGTTGATAATAAGGGGTCAAAGAGATTAGCCGCTTCCTTGACACTACTTCCTCTTAATGAGCTGAGTGATCTTATCAGAAAAGAGGTTGCAATGATTGGTTTCACAGAGGTTTTGACATTCATACTCTGCTCTAAGAAAGAAAACTTTTCCATGCTAAACCGCAAAGATGATAAATCCAAAGCGGTTATCATTGGAAACCCTAGGTCTTCAGACTTCGAGGCTGTCCGGACTACTCTTATGCCTGGTATTTTGAAAACTGTTGCTCACAACAAGGATCACCCAAAACCCATAAAGATTTTTGAAGTGGGCGATATAGCTATTTTGGATGACAATGATGTTGGTGCAAAAAATCTCCGCCAACTTGCTGCACTATACTGTGGTGCTAATGCAGGATTTGAGATAATTCACGGCTTGGTGGACAGAGTAATGGAAAAGAATGGGATTACCTTTGTTTCACCTGGTGATAAATCAGGGTATTATATTGAGCGGTCAGATGAGCCCGAGTTTCTTGCTGGTAGACAAGCAAGAATTATTTATAAGGGAAAGCAAATAGGGACTTTTGGCATTGTTAATCCGGAGGTATTAAACAACTTCGACATTTCGGATCCCTGCTCCTTTGTTGAACTCAACATCGAAAGTTTCTTGTAA 1803 0.3977 MPTISVGRDNLFAALGRTYTQEEFEDVCFSFGIELDDVTTEKAIVRKEKHLEEEADEDEEVIYKIEIPANRYDLLCLEGLAQALRVFGGVQEIPTYKLADISKDAMLKMHVKPETSLIRPFVVCAVLRGLTFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPSSINFTPLKQERSFRADELMEFYKSDLKLKKFLHIIEDSPVYPVIYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKVVLNTMVTAFAEYCENKFVIEPVEVISSDGKSHIYPDLSIYNMEVDLSYITGQIGVSLEAEEVTKFLYRMQLHAKQSSDKKHSNIIVSVPPNRSDVIHPIDVVEDVAIAYGFNAIMDQAIVDNKGSKRLAASLTLLPLNELSDLIRKEVAMIGFTEVLTFILCSKKENFSMLNRKDDKSKAVIIGNPRSSDFEAVRTTLMPGILKTVAHNKDHPKPIKIFEVGDIAILDDNDVGAKNLRQLAALYCGANAGFEIIHGLVDRVMEKNGITFVSPGDKSGYYIERSDEPEFLAGRQARIIYKGKQIGTFGIVNPEVLNNFDISDPCSFVELNIESFL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03799 600 Gene3D - 1 88 - -
Tsu04g03799 600 SUPERFAMILY Class II aaRS and biotin synthetases 374 599 IPR045864 -
Tsu04g03799 600 ProSiteProfiles B5 domain profile. 303 382 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Tsu04g03799 600 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 88 IPR040659 -
Tsu04g03799 600 SUPERFAMILY Putative DNA-binding domain 307 380 IPR009061 -
Tsu04g03799 600 Pfam tRNA synthetase B5 domain 308 377 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Tsu04g03799 600 CDD PheRS_beta_core 402 599 IPR041616 -
Tsu04g03799 600 SMART B5_2 305 377 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Tsu04g03799 600 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 600 IPR045060 GO:0004826|GO:0006432
Tsu04g03799 600 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 600 - -
Tsu04g03799 600 Gene3D - 100 304 IPR020825 -
Tsu04g03799 600 SUPERFAMILY Putative DNA-binding domain 4 94 IPR009061 -
Tsu04g03799 600 Gene3D - 306 380 - -
Tsu04g03799 600 Pfam B3/4 domain 119 280 IPR005146 GO:0003723|GO:0004826
Tsu04g03799 600 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 1 600 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Tsu04g03799 600 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 402 596 IPR041616 -
Tsu04g03799 600 SMART B3_4_2 118 280 IPR005146 GO:0003723|GO:0004826
Tsu04g03799 600 Gene3D Bira Bifunctional Protein; Domain 2 401 600 IPR045864 -
Tsu04g03799 600 SUPERFAMILY PheT/TilS domain 221 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03799 Tsu-Chr4 46909797 46917369 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03799 K01890 - gmx:100805249 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03799 04 46909797 46917369 Tsu04g03799 04 46909797 46917369 ECH