Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03790 ATGTCACTCACCCGCACAGCAATTCACCGCTTCCGTTACATTTACCGCACAAtatcaccaccaccacaaccatCTCCTATCACCGATCGCTTTCAATTTCAACGTTTTCTCTCTCATCCCATTCCAAAACCCTTCCAATTCCACTCCTCTTCTTACTCCTCCTCATCTGTCGGTGCTGGCGACGATGTTTATCCTACCGGTGACTTCAATTTTGAGCCCCTCACCGGCTTCAATAAATTCACCGTCAAACTCAAGACGCTAATAGCTTTACCCTGGGAGCGTATTCAACACGGCAGCATCTTGAAAATCATTTTGCGCGGCCAGATAACAGATCAGCTGAATAGTAGATTCTCTAGGGTATTATCTCTGCCCCAAATTTGTGATAATTTGTTGAAAGCAGCTTATGATCCTCGCATTTCTGGTGTATATCTtcatattgatattttaaattgtggttgGGCTAAACTTGATGAAATTCGAAGACAAATCTTAAATTTCAGAAAATCAGGAAAATTTGTTGTGGCTTATGTCCCTTCATGTCGAGAAAAAGAATATTATATTGCTTGtgcttgtgaagaaatatatgcCCCTCCGAGtgcttatttttctttgtttggattgacCGTTCAAGCAGGATTTGTCAGAGGTGTGTTAGACAATCTTGGAATTGAACCACAAGTTGAAAAATTTGGCAAATATAAAAGTGCAGGCGAACAACTAACTCGTAAAACCATGTCTGAAGACAATCGCGAGATGCTGACTACATTACTGGATAATATCTATTCAAATTGGCTAGACAAAGTCTCTTCTGCTAAAGgaaagaaaagagaagacaTTGAGAACTTCATAAATGAAGGTGTCTATCAAGTTGACAGACTGAAAGAAGAAGGTTTCATATCAAACATACTCTATGATGACGAGGTTATGACTAGGTTGAAGGAGAGACTTCAAGTGAACACTGACAAAAATCTGCCTATAGTTGATTACAGAAAATACTCTGGAGTTAGAAAATGGACTGTTGGAATATCAGGTGGTAAAGAACTGATAGCCGTCATCCGAGCCTCAGGGACCATCCGTCGTGTTGAGAGTCCATTAAGTGCCCCCAGCAAAGGTATCATCGGAGAGAAGTTCATTGAGAAGATTCGTAGGGTCAGAGAATCAAAGAAATTCAAGGCTGCTATTATCCGAATTGATAGTCCAGGGGGTGATGCTCTCGCTTCCGATTTAATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCTGTCATTGCTTCAATGTCTGATTTGGCAGCAAGTGGAGGATACTACATGGCAATGGGAGCAAGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTTGTCACAGGAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGTTTCAACAAAGAAATTATATCAAGGGGTAAATATGCTGAGCTCCTTGCAGCTGAACAGCGTTCTTTTAGGCCACATGAAGCAGAACTATTTGCCAAGTCTGCACAGaatatttataaacaatttcGAGATAAGGCGGCTTTTTCCAGATCAATGACTGTAGACAAGATGGAAGAGGTCGCACAAGGAAGGGTTTGGACCGGTAAGGATGCAGCATCTCATGGTTTGGTTGATGCTATCGGTGGGCTATCTCGTGCTATTGCTATAGCAAAACTGAAGGCCAATATACCTCAAGACAGACAGGTTACTGTTGTGGAGCTCTCAAGACCTAGTCCTTCTCTACCTGAGATTTTAAGCGGTCTAGGTAATTCTCTAGTTGGAGTGGACCAAACACTTAAGGAATTACTACATGACTTGACATTTTCCGATGGAGTTCAAGCACGGATGGATGGAATCATGTTTCAGAAACTAGAAGGATATCCATCTGCCAACCCCATTTTAGCATTGATGAAAGATTACCTCAGTTCTATGTAG 1950 0.3923 MSLTRTAIHRFRYIYRTISPPPQPSPITDRFQFQRFLSHPIPKPFQFHSSSYSSSSVGAGDDVYPTGDFNFEPLTGFNKFTVKLKTLIALPWERIQHGSILKIILRGQITDQLNSRFSRVLSLPQICDNLLKAAYDPRISGVYLHIDILNCGWAKLDEIRRQILNFRKSGKFVVAYVPSCREKEYYIACACEEIYAPPSAYFSLFGLTVQAGFVRGVLDNLGIEPQVEKFGKYKSAGEQLTRKTMSEDNREMLTTLLDNIYSNWLDKVSSAKGKKREDIENFINEGVYQVDRLKEEGFISNILYDDEVMTRLKERLQVNTDKNLPIVDYRKYSGVRKWTVGISGGKELIAVIRASGTIRRVESPLSAPSKGIIGEKFIEKIRRVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDLAASGGYYMAMGARVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAELLAAEQRSFRPHEAELFAKSAQNIYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANIPQDRQVTVVELSRPSPSLPEILSGLGNSLVGVDQTLKELLHDLTFSDGVQARMDGIMFQKLEGYPSANPILALMKDYLSSM 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03790 649 CDD S49_SppA_67K_type 101 314 - -
Tsu04g03790 649 SUPERFAMILY ClpP/crotonase 349 554 IPR029045 -
Tsu04g03790 649 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 349 562 IPR004635 GO:0006508|GO:0008233
Tsu04g03790 649 PIRSF Protease_4_SppA 73 649 IPR004634 GO:0006465|GO:0008233|GO:0016021
Tsu04g03790 649 CDD S49_Sppa_N_C 349 563 IPR002142 GO:0006508|GO:0008233
Tsu04g03790 649 PANTHER PROTEASE 4 57 648 - -
Tsu04g03790 649 Gene3D - 489 614 - -
Tsu04g03790 649 Gene3D - 342 488 - -
Tsu04g03790 649 Gene3D - 93 209 - -
Tsu04g03790 649 SUPERFAMILY ClpP/crotonase 96 304 IPR029045 -
Tsu04g03790 649 Gene3D - 210 273 - -
Tsu04g03790 649 Pfam Peptidase family S49 166 318 IPR002142 GO:0006508|GO:0008233
Tsu04g03790 649 Pfam Peptidase family S49 417 567 IPR002142 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03790 Tsu-Chr4 46843634 46851146 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03790 K04773 - gmx:100809623 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03790 04 46843634 46851146 Tsu04g03790 04 46843634 46851146 ECH