Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03765 ATGAGGTGGGAAAAAGTCGAGGTTAAGCCGATTGCAAAAGAGGGTGATGGAGGGCCAGGGAAAAGGTGGGGTCATACCTGTAACTCCATTAATGGTGGTAGACATATCTATGTCTTCGGTGGTTATGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTTTTTGACACTGTGAACCAGACATGGAGCCAACCTGAAATAAAAGGCACCCCACCTACTCCAAGGGACAGTCACACTTGCAGTGCTGTTGGTCATAGACTATTTGTGTTTGGGGGTACTGATGGAATGAATCCACTTAAGGATTTGCATATTTTAGACACTTCTTTGCAAACTTGGGAATGTCCAATTATAAGAGGAGAAGGGCCAGAGGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGCCAACGGCTCTTCATCTTTGGTGGTTGTGGAAAATCTGCTGATAATAACAATGAGGTCTACTACAATGATCTTTACATACTGAATACAGAGACACTTGTTTGGATGCGCCCTACAACATCAGGCACACCACCATCTCCTCGTGATAGCCACACTTTCTCATCGTGGAAGAACAAAATTATTGTGATAGGGGGTGAAGACGGGCATGATTATTATTTGTCTGACGTTCATATCCTTGACACTGATACTCTAATTTGGAGGGAGCTGAGTACATCAGGCCAACTATTGCCACCTCGGGCCGGTCATTCCACTGTTTCTCTTGGCAAGaacttgtttgtttttggtggatTTACAGACGCCCAAAATCTATACAACGACCTTTATATGCTTGATACTGATACTGGTGTTTGGACAAACGTTACAACTGCAACCAATTGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGACCCATTTAAGAGTGGCGTTCTTGTGTTTATCGGTGGTTGTAACAAAAGTCTTGAAGCCCTGGATGATATGTATTACCTACATACAGGTTTTGCTAGGGATAGTGAACAGAGACCAGATAAGTTATCTATGAAGAAGCAATTGAAGCTGAAATGCCAAGAAGAACAAAATCTCAGTCCTGGCCAAAATCAAGTTTTGCCTGGATTTGGAGTAGGTTCTAACATTGGTCAGGCCATGACTGTGTTGAATTATAGCCAGCCAAATAGACCAAATATCCCGGCAAATCAATCAATTTCTTCTCATGGAAAGAAAACATTTGAAGCCAAGGTTACTGAAAACATCTCAGAAGGATATACTATTGAAACTGTCATTGATGGAAAGCCTCTTCGTGGAATTCtgtttttaaacaaacaaaacactCTTCAGCCATCCGCTCATGTTATCAATAGGAAAAGGACTGCTGGTGAAATTGATGGTATCATCTCAAATGGTGCACATTCTAACATTAAGACTGCTAAAGTGAATCCAATGGAAAATAGACATTCGGAATCTCTCCAACACAGTTCTGAAGCTGTTGTTGCACTTGCAGCAAGCAATCCAATAACTGCCAATGCCGCTGTTAACCATAAGGTTTATACCAACCCAGAACCAGAAGCTGCTTCTTTGAATCGAAATgctgaaaaaaatgaaacaccaACCTTGGGAGGGAACTTGAAAAATGATGGAGTAAGTGATGCGACAAATTCCAGAGGTGAAGCCCAAACAAATGTTCAAACAAACGTTCAAACAAATATGCTGATTTCCAACTTAGAAGCTTCAAGGCATGATACAAATAGTGATGCATCAAACTGGAACACACAATTTATGAAACCTGTCACAGCTGAGAGTCCTATGAATTTGTCAAATCAAGGTGCAGTGGTGGATTCTACAAATCCAAGGACAGGAGAATCCAGCGAACCAGCAAAACGAGTTTGA 1848 0.4064 MRWEKVEVKPIAKEGDGGPGKRWGHTCNSINGGRHIYVFGGYGKDNCQTNQVHVFDTVNQTWSQPEIKGTPPTPRDSHTCSAVGHRLFVFGGTDGMNPLKDLHILDTSLQTWECPIIRGEGPEAREGHSAAVVGQRLFIFGGCGKSADNNNEVYYNDLYILNTETLVWMRPTTSGTPPSPRDSHTFSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVSLGKNLFVFGGFTDAQNLYNDLYMLDTDTGVWTNVTTATNCPSARFSVAGDCLDPFKSGVLVFIGGCNKSLEALDDMYYLHTGFARDSEQRPDKLSMKKQLKLKCQEEQNLSPGQNQVLPGFGVGSNIGQAMTVLNYSQPNRPNIPANQSISSHGKKTFEAKVTENISEGYTIETVIDGKPLRGILFLNKQNTLQPSAHVINRKRTAGEIDGIISNGAHSNIKTAKVNPMENRHSESLQHSSEAVVALAASNPITANAAVNHKVYTNPEPEAASLNRNAEKNETPTLGGNLKNDGVSDATNSRGEAQTNVQTNVQTNMLISNLEASRHDTNSDASNWNTQFMKPVTAESPMNLSNQGAVVDSTNPRTGESSEPAKRV 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03765 615 MobiDBLite consensus disorder prediction 510 543 - -
Tsu04g03765 615 Pfam Kelch motif 122 165 - -
Tsu04g03765 615 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g03765 615 Pfam Galactose oxidase, central domain 34 82 - -
Tsu04g03765 615 SUPERFAMILY Galactose oxidase, central domain 119 317 IPR011043 -
Tsu04g03765 615 MobiDBLite consensus disorder prediction 1 23 - -
Tsu04g03765 615 PANTHER KELCH REPEAT DOMAIN 1 549 - -
Tsu04g03765 615 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 549 - -
Tsu04g03765 615 Pfam Galactose oxidase, central domain 180 225 - -
Tsu04g03765 615 Pfam Galactose oxidase, central domain 231 280 - -
Tsu04g03765 615 SUPERFAMILY Kelch motif 16 170 IPR015915 GO:0005515
Tsu04g03765 615 MobiDBLite consensus disorder prediction 585 608 - -
Tsu04g03765 615 Gene3D - 149 396 IPR015915 GO:0005515
Tsu04g03765 615 SMART kelc_smart 86 135 IPR006652 GO:0005515
Tsu04g03765 615 SMART kelc_smart 35 85 IPR006652 GO:0005515
Tsu04g03765 615 SMART kelc_smart 192 242 IPR006652 GO:0005515
Tsu04g03765 615 SMART kelc_smart 243 289 IPR006652 GO:0005515
Tsu04g03765 615 MobiDBLite consensus disorder prediction 585 615 - -
Tsu04g03765 615 Gene3D - 1 148 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03765 Tsu-Chr4 46580881 46587998 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03765 49 308 Acyl Lipid Metabolism Gene Families AT3G05420 28.364 5.03e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03765 - - cam:101509662 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03765 04 46580881 46587998 Tsu04g03765 04 46580881 46587998 ECH