Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03762 ATGGCAATGCAGGAAGCAAACCCTACTTCTGCTCCAAGTCCTCAAGTTGTTGGCAATGCCTTTGTGGAGCAATATTATCATATTCTGCATCAATCTCCAGACTTGGTGCACAGATTCTATCAGGATTCAAGTCTCTTAAGCAGATCCGACAGCAATGGTGTGATGAAGACCGTAACAACTACAAAAGCAATCAATGAAACAATTGTTTCCCTGAACTATGAAGACTGTACGGCAGAAATAAAAACTGCTGATGCTCAGGAGTCCTATGAGAAAGGTGTCATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAACGTGAGAAGGAAGTTCGCGCAGACTTTCTTTTTGGCTCCACAAGATAAAGGATATTATGTCTTAAATGATGTCTTTAGGTACATTGAGGAGAACGATGCCCCACAGTTAAATTCTGCTTCAATAAATGTCATCCATGAAAATCCCGAGGCAGTGCACATACCAAAATCAGATGATGTGCACCCTTCCGAACATATTGTGGAAGACCCTGTAATCTCTGCAGAGGGTGAAAAACTTAATAATGGTGCGGAAGTTTATCATCCTCAGGACAACAAGGAAGAAGGATCGGTTGTTGATGAAGAGGTTGTCATACCGCCTACTGATTTAAGTGAGAATGATGTTGTTACTATTCATGATTCAACTTCTGCAGTCCAGGATGATGCAcgaaagacatcatatgcatcaatTGTAATGAAAAGTAAAGCAGCATCTGGTCGGGTCTATGTTCCCAGCCGAGCTGCTAGAGTGGCATCTGCTAAATCCAACGAACAAAGGCACGCTCCCACAAAACCTACTCCTGGGCCTGAGGCATTTGCTCCTAGTAGCGACAGTGGACCAGGGAGTAGTGATGTTCCTGAAGCTGAAGGTCATTCCATATACATACGGAACTTGCCATTTAATGCAACAATTGAACTTCTTGATGagatttttaagaaatttgGTCCTATTAAGCATGGTGGAGTCCAAGTAAGAAGCAGTAAGCATGGCTTCTGTTTTGGCTTTGTTGAATTTGAGGAATATAGTTCTGTGCAAAGTGCACTTAAGGCTTCACCCATCACTATTGGTGAGCGACAGGCTGTTATTGAGGAAAAGATATCCACTACACGAGTCAGCGACGGCGGAAGAGGGAGGTATCCTTCAGGAAGAGGTGGTTTCCGAAACGAGGGTTTCCGGGGCCGTGGGAGATTTGGTGGTGGACGAGGTTATGGAAGAAATGAATTCAGAAACCAAGGGGAATTCTCAGGACGACCTAGGAGTTCTCATCGGCCAAGTCAAAATGGAGGTGGGCGGGGCGGAGGCGGACGTCATGGTGCGGGAAACCATAATGTTACACCAACTACTTCAGTGTGA 1386 0.4358 MAMQEANPTSAPSPQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTKAINETIVSLNYEDCTAEIKTADAQESYEKGVIVLVTGCLTGKDNVRRKFAQTFFLAPQDKGYYVLNDVFRYIEENDAPQLNSASINVIHENPEAVHIPKSDDVHPSEHIVEDPVISAEGEKLNNGAEVYHPQDNKEEGSVVDEEVVIPPTDLSENDVVTIHDSTSAVQDDARKTSYASIVMKSKAASGRVYVPSRAARVASAKSNEQRHAPTKPTPGPEAFAPSSDSGPGSSDVPEAEGHSIYIRNLPFNATIELLDEIFKKFGPIKHGGVQVRSSKHGFCFGFVEFEEYSSVQSALKASPITIGERQAVIEEKISTTRVSDGGRGRYPSGRGGFRNEGFRGRGRFGGGRGYGRNEFRNQGEFSGRPRSSHRPSQNGGGRGGGGRHGAGNHNVTPTTSV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03762 461 Gene3D - 6 137 - -
Tsu04g03762 461 CDD RRM_SF 304 361 - -
Tsu04g03762 461 SUPERFAMILY RNA-binding domain, RBD 294 408 IPR035979 GO:0003676
Tsu04g03762 461 MobiDBLite consensus disorder prediction 382 461 - -
Tsu04g03762 461 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Tsu04g03762 461 MobiDBLite consensus disorder prediction 260 299 - -
Tsu04g03762 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 361 IPR000504 GO:0003723
Tsu04g03762 461 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Tsu04g03762 461 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 450 IPR039539 -
Tsu04g03762 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 387 IPR000504 GO:0003723
Tsu04g03762 461 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 450 - -
Tsu04g03762 461 Gene3D - 218 381 IPR012677 -
Tsu04g03762 461 CDD NTF2 13 135 IPR018222 -
Tsu04g03762 461 SMART rrm1_1 303 374 IPR000504 GO:0003723
Tsu04g03762 461 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Tsu04g03762 461 MobiDBLite consensus disorder prediction 424 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03762 Tsu-Chr4 46556094 46563350 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03762 K24983 - gmx:100801253 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03762 04 46556094 46563350 Tsu04g03762 04 46556094 46563350 ECH