Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03747 ATGAATCCAGAAAAGTTTACTCACAAGACAAACGAAGTACTTGCTGGTGCTCATGAACTAGCATCAACATCAGGACATGCTCAGATCACTCCATTACATCTTGCATCTGTTCTAATTTCTGATCCTAATGGTATATTTTACCAAGCAATTTCGAATGTTGGTGGTGGTGAAGAATCAGCACGTGCTGTTGAAAGAGTTTTGAAACAAGCATTGAAGAAATTACCATTTCAATCACCTCCATCAGATGAAGTACCTGGAAGTACTTCACTTATTAAAGTGATTAGAAGAGCACAAGCTGCTCAGAAATCACGTGGTGATACTCATTTAGCTATTGATCAATTGATTTTGGGAATTCTTGAGGATTCTCAAATTGGTGATTTGTTTAAAGAAGCTGGTGTTTCTGCTTCTAGAGTTAAATCAGAAGTTGAAAAGCTTCGTGGTAAAGATGGGAAAAAAGTTGAAAGTGCTTCTGGTGATGCTAATTTTCAAGCTTTGAAAACTTATGGTAGAGATTTAGTTGAACAAGCAGGGAAGCTTGATCCTGTCATTGGACGTGATGAAGAGATAAGAAGAGTTGTTAGGATTTTGTCAAGAAGGACTAAGAACAATCCTGTTCTTATTGGTGAACCGGGTGTCGGAAAAACTGCTGTTGTTGAAGGATTGGCTCAGAGGATTGTTAGAGGTGATGTTCCTAGTAATCTTGCTGATGTTAGGTTGATTGCTTTGGATATGGGTGCATTGGTGGCTGGTGCTAAGTATAGGGGTGAATTTGAAGAGAGGTTGAAAGCTGTTCTGAAAGAAGTTGAAGAAGCTGAAGGGAAAGTTATTCTTTTCATTGATGAAATTCATCTTGTTCTTGGTGCTGGTAGAACTGAAGGATCAATGGATGCTGCTAATCTTTTTAAACCTATGCTTGCTCGTGGACAACTTAGATGTATTGGTGCTACAACACTTGAGGAATATAGAAAGTATGTTGAAAAAGATGCTGCATTTGAAAGAAGGTTTCAACAGGTTTATGTGGCTGAACCTAGTGTCCCTGATACTATTAGTATCCTTCGTGGATTAAAAGAGAGATATGAGGGTCATCATGGTGTTAGGATTCAAGATCGTGCTATTGTTGTTGCAGCTCAATTGTCTAGTCGGTACATAACTGGGCGTCATCTACCTGATAAGGCAATTGATTTAGTTGATGAAGCATGTGCAAATGTGAGAGTTCAACTTGATAGTCAGCCTGAAGAAATTGATAACCTTGAAAGGAAGAGAATGCAACTAGAAGTGGAGCTTCATGCTCTAGAGAAAGAAAAGGACAAAGCTAGCAAAGCTCGTCTTGTAGATGTGCGGAAAGAACTTGATGACTTGAGAGACAAGCTTCAACCTCTGAAGATGAAGTATAGTAAAGAGAAAGAGAGGATTGATGAGATCAGGAGGCTGAAGCAGAAACGTGAAGAGCTTATGTTTGCACTACAAGAGGCTGAGAGGCGGTATGATCTAGCAAGAGCTGCAGACCTAAGATATGGTGCAATTGAAGAGGTGGAAACTGCAATTAAAAACCTTGAAGGTAGCGCTGATGGGAACACCGATGAGAACTTAATGTTGACAGAAACAGTTGGACCAGACCAAATTGCTGAGGTTGTTAGTCGATGGACTGGTATTCCGGTGACTCGACTAGGCcaaaatgaaaaagagaggtTGGTTGGACTTGGTGACAGATTGCACACTAGAGTTGTGGGACAAGACCAAGCAGTTAATGCTGTTGCTGAGGCTGTATTGAGATCAAGAGCTGGTTTAGGAAGACCTCAACAACCAACTGGTTCCTTCCTATTCCTTGGTCCAACTGGTGTTGGTAAAACTGAACTTGCAAAGGCTCTTGCAGAACAactttttgatgatgaaaatcAGTTAGTGAGAATCGACATGTCGGAATACATGGAACAACACTCTGTATCAAGATTGATTGGTGCACCACCAGGGTATGTTGGACACGAGGAAGGTGGTCAACTAACTGAAGCTGTAAGAAGAAGGCCATACAGTGTGGTACTCTTTGATGAAGTGGAGAAAGCACATACATCTGTATTCAACACTCTGCTTCAAGTCTTGGATGATGGAAGGCTAACTGATGGACAAGGAAGAACTGTGGATTTTAGAAACACTGTGATTATCATGACCTCAAACCTTGGTGCTGAGCATCTCCTAAGTGGACTTTCAGGAAAATGTACCATGCAAGCTGCTCGCGATCGAGTAATGCAGGAAGTAAGAAGACATTTCAGGCCAGAATTATTGAACCGACTGGATGAAGTTGTTGTATTCGATCCTCTTTCACATGAACAATTGAGGAAGGTTGCAAGGTTGCAAATGAAGGATGTAGCTAGCCGTCTTGCTGAAAAAGGAATTGCATTGGCAGTGACAGATGCAGCACTAGATTATATTCTTGCCGAGAGCTATGATCCAGTATATGGTGCTAGACCAATTAGAAGGTGGCTAGAGAGGAAGGTGGTGACTGAGCTGTCTAGGATGCTTATAAGGGAAGAAATTGATGAGAATACAACAGTTTTCATAGATGCTGGTCCTAAGGGAAGTGACTTGTCATACCGTGTAGAAAAGAATGGAGGGATTGTTAATGCTGAAACTGGATTGAAGTCAGATATCTTGATTCAGATACCAAATGGACCAAAAAGTGATGCTGTTCAGGCTGTCAAGAAAATGAGAATCCaagaaattgatgatgatgaaatggAAGAGTGA 2742 0.4023 MNPEKFTHKTNEVLAGAHELASTSGHAQITPLHLASVLISDPNGIFYQAISNVGGGEESARAVERVLKQALKKLPFQSPPSDEVPGSTSLIKVIRRAQAAQKSRGDTHLAIDQLILGILEDSQIGDLFKEAGVSASRVKSEVEKLRGKDGKKVESASGDANFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRAIVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVDVRKELDDLRDKLQPLKMKYSKEKERIDEIRRLKQKREELMFALQEAERRYDLARAADLRYGAIEEVETAIKNLEGSADGNTDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNEKERLVGLGDRLHTRVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLSGKCTMQAARDRVMQEVRRHFRPELLNRLDEVVVFDPLSHEQLRKVARLQMKDVASRLAEKGIALAVTDAALDYILAESYDPVYGARPIRRWLERKVVTELSRMLIREEIDENTTVFIDAGPKGSDLSYRVEKNGGIVNAETGLKSDILIQIPNGPKSDAVQAVKKMRIQEIDDDEMEE 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03747 913 Pfam AAA domain (Cdc48 subfamily) 602 766 IPR003959 GO:0005524|GO:0016887
Tsu04g03747 913 Gene3D - 772 867 - -
Tsu04g03747 913 Pfam C-terminal, D2-small domain, of ClpB protein 772 850 IPR019489 -
Tsu04g03747 913 Gene3D - 3 149 IPR036628 -
Tsu04g03747 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 550 IPR027417 -
Tsu04g03747 913 Coils Coil 508 528 - -
Tsu04g03747 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 551 855 IPR027417 -
Tsu04g03747 913 Pfam Clp amino terminal domain, pathogenicity island component 97 147 IPR004176 -
Tsu04g03747 913 Pfam Clp amino terminal domain, pathogenicity island component 17 62 IPR004176 -
Tsu04g03747 913 SMART ClpB_D2_small_2 772 863 IPR019489 -
Tsu04g03747 913 Coils Coil 407 441 - -
Tsu04g03747 913 Gene3D - 345 549 IPR027417 -
Tsu04g03747 913 Coils Coil 443 470 - -
Tsu04g03747 913 ProSitePatterns Chaperonins clpA/B signature 1. 296 308 IPR018368 GO:0005524
Tsu04g03747 913 Coils Coil 254 274 - -
Tsu04g03747 913 CDD AAA 576 771 - -
Tsu04g03747 913 ProSiteProfiles Clp repeat (R) domain profile. 3 148 IPR004176 -
Tsu04g03747 913 SMART AAA_5 602 773 IPR003593 -
Tsu04g03747 913 SMART AAA_5 200 345 IPR003593 -
Tsu04g03747 913 Pfam ATPase family associated with various cellular activities (AAA) 205 318 IPR003959 GO:0005524|GO:0016887
Tsu04g03747 913 PANTHER ATP-DEPENDENT CLP PROTEASE 4 866 - -
Tsu04g03747 913 SUPERFAMILY Double Clp-N motif 4 158 IPR036628 -
Tsu04g03747 913 ProSitePatterns Chaperonins clpA/B signature 2. 636 654 IPR028299 -
Tsu04g03747 913 Pfam AAA lid domain 345 444 IPR041546 -
Tsu04g03747 913 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 866 - -
Tsu04g03747 913 CDD AAA 183 338 - -
Tsu04g03747 913 Gene3D - 151 344 IPR027417 -
Tsu04g03747 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 606 624 IPR001270 GO:0005524
Tsu04g03747 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 651 669 IPR001270 GO:0005524
Tsu04g03747 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 680 698 IPR001270 GO:0005524
Tsu04g03747 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 713 727 IPR001270 GO:0005524
Tsu04g03747 913 Coils Coil 474 501 - -
Tsu04g03747 913 Gene3D - 555 771 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03747 Tsu-Chr4 46429362 46433181 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03747 K03695 - gmx:732632 1627.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03747 04 46429362 46433181 Tsu04g03747 04 46429362 46433181 ECH