LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g03737	ATGTTCAATTCAAAGAATTCTCCTGTGAAAGTTGGTAAACACAACTCTGTTAGTCCTGTCAATGATGTTAAATCATGGTCGAACCCGTTTGATTCTGATGACGAGGAAAAGGATAACAAAAAGTATAATTCCTCGAAGAAGACTTCTTCAGAACGAGCGTTAGTTACTTTAGAAGTGAACACCAACCCATTTGATGACATTGATGACATTAAGAAATCGTCATCATCTACGTATGCCCATCAGTCAGCAGACCGGAACAGTAAGAAATCTTCATCATCTATGTATGCTGGTCAATCAATGGACCGGAACAGGTACAAGAATAATTTTCGTGATTCTGGTGGACTAGAGAATCAATCTGTACAAGAGTTGGAGAATTATGCTGTTTACAAGGCTGAGGAGACTACAAAATCGGTCCATGATTGTTTGAAGATAGCAGAGAATATAAGAGAGGATGCTACCAAGACTTTAGTCACCCTTCATCATCAGGGTGAGCAAATTACTAAGAGTCACCAAGTCGCTGCTGACATTGATCAAGATTTAAGTCGGGGAGAAAAGCTTTTGGGAAGTCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCAAAGAAGACGCGTACAATAACAGGCCCTGTTATTTTTGGAgATGATCCGGTTAGAAGAAAGGGAAACCACTTGGAACAGAGAGAGAAGTTGGGATTGACTTCTGCATCCAAAGGGCAGTCCAAGCTGCGGACTCCACCTCAGGAACCAACAGCCGCACTTCAAAAAGTCGAGTTTGAAAAGGAGAAGCAAGATGATGCACTGTCAAATTTAAGTGATCTATTGGGAGAGCTTAAAGACATGGCTGTTGACATGGGATCGGAAATTGAAAGGCATAACAAAGCCTTGAGTCATCTAGAAGACGATGTGGATGAGTTGAATTTCAGAGTGAAAGGTGCTAATCAACGCGGTCGTCGTTTACTTGGAAAATAA	969	0.4138	MFNSKNSPVKVGKHNSVSPVNDVKSWSNPFDSDDEEKDNKKYNSSKKTSSERALVTLEVNTNPFDDIDDIKKSSSSTYAHQSADRNSKKSSSSMYAGQSMDRNRYKNNFRDSGGLENQSVQELENYAVYKAEETTKSVHDCLKIAENIREDATKTLVTLHHQGEQITKSHQVAADIDQDLSRGEKLLGSLGGLFSKTWKPKKTRTITGPVIFGDDPVRRKGNHLEQREKLGLTSASKGQSKLRTPPQEPTAALQKVEFEKEKQDDALSNLSDLLGELKDMAVDMGSEIERHNKALSHLEDDVDELNFRVKGANQRGRRLLGK	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g03737	322	CDD	SNARE_SNAP25N_23N_29N_SEC9N	125	189	IPR044766	GO:0005484\|GO:0031201
	Tsu04g03737	322	CDD	SNARE_Qc	260	318	-	-
	Tsu04g03737	322	PANTHER	TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED	88	322	-	-
	Tsu04g03737	322	PANTHER	TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED	1	83	-	-
	Tsu04g03737	322	MobiDBLite	consensus disorder prediction	28	47	-	-
	Tsu04g03737	322	SUPERFAMILY	SNARE fusion complex	253	320	-	-
	Tsu04g03737	322	SUPERFAMILY	SNARE fusion complex	118	188	-	-
	Tsu04g03737	322	MobiDBLite	consensus disorder prediction	1	114	-	-
	Tsu04g03737	322	SMART	tSNARE_6	123	190	IPR000727	-
	Tsu04g03737	322	SMART	tSNARE_6	252	319	IPR000727	-
	Tsu04g03737	322	Gene3D	-	254	321	-	-
	Tsu04g03737	322	Coils	Coil	288	315	-	-
	Tsu04g03737	322	Gene3D	-	114	191	-	-
	Tsu04g03737	322	PANTHER	SYNAPTOSOMAL ASSOCIATED PROTEIN	88	322	-	-
	Tsu04g03737	322	PANTHER	SYNAPTOSOMAL ASSOCIATED PROTEIN	1	83	-	-
	Tsu04g03737	322	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	257	319	IPR000727	-
	Tsu04g03737	322	MobiDBLite	consensus disorder prediction	1	27	-	-
	Tsu04g03737	322	MobiDBLite	consensus disorder prediction	74	103	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g03737	Tsu-Chr4	46353721	46355549	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g03737	K18211		-	gmx:100809874	455.292

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g03737	04	46353721	46355549	Tsu04g03737	04	46353721	46355549	ECH