Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03716 ATGGGTTCTCTTCCTCTCAGCGATGATCGATCAGAGATTGTATTCTTCGACGTAGAAACCACCGTTCCGACCCGACCCGGTCAGGGTTTTGCACTTTTAGAATTCGGTGCTATTCTGGTGTGTCCCAGGAAACTGACAGAGCTTCGAAACTACTCAACTTTGATTCGACCCGCCGACCTTTCACTCATTTCTCCGTTATCGGAGCGATGTAACGGAATCAACGCCGAAGCTGTTTCCAACGCTCCTACTTTTGCTGATATTGCTAATGCCGTTTATGACCTTCTTCAcgGGAGGATTTGGGCGGGTCATAATATCTTAAGATTTGATTGTGTGCGGATTAGAGATGCTTTTGCTGCGATTAATCAGACACCACCTGAACCTAAGGGTACAATTGATTCTTTGGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCTGGTAACATGAAGATGGCTACTCTTGCAACCTATTTTGGTCTTGGACAGCAGACACATAGGAGCTTAGATGATGTTCGGATGAATCTTGAAGTTCTCAAATACTGTGCTACAGTTTTATTCTTGGAATCAAGTCTCCCAGATATATTCACTGAAAATTGTTGGGTTTCACCAAATGCTGTTACAAGAAGTCGCAGTAATGGGAAATCTCGACCAGAAGGGGGTTTGTCAAATATGAATAAGGATTCTGTGTTGGTATCATCTCCTGAAACTATAGATAAAAATCATCCAATCCTTTCTCTTGCAACAAGCAACACAAAAGTGGCTGTCTCAAATGTTGCACATTCCAGTACAGCTCAATCAAATTCTTTTAGCTTTCGTGAGCTTCAGGATGAAATTAATAGAGAATCCATTAGGACAGATGTTGCCATGGATGAAAAATCCATTGAATATTCACCGGATTCATCAGCCTCTTCTTCTGTGCCTCAGGCTTGCAGTAGCTCTATTGCTATTTTAGAGCCTGAAAAGATATGTATTTCTTCTATTGATGCATCTCTTGTTCCTTTTTATCGCGGCAGTCAAAGGATAGAATTGCATCATGAAGGTTTCTCATTTAAACTTCATTGTTCTGGTTTGAAAGTACGGTTTGGAATAAGCACGAAGTTTGTTGACAGTGCTGGTCGGCCACGGTTAAATTTTGTGGTTGATCCATCACCAAGTTTATGTAATGTTCTTGATGCATGTGACAATGTTGCACGTAAGTTATCCTCGGAATCTGGTAGCGGCTCTGATTGGAGGCCAGTTGTTATTAGGAAAGAAGGCTTCTTCAACTATCCTACTATCAGATTGCATATACCTACAGCAGTATGTGAAGAGATTGCCATTTACGCAACAGAAATATATCAAAAAGAATCATCTGGGTCTGTGCAAAGGCTTCTTTTCAGCAAATTTGACGCTGCAGAACTTGATTCCTTGTTCAAGCCTGGGACATTTGTTGATGCAGTTTTCTCCTTGGATCCGTATGACTATCATCAGAATGCAGGGATTAAATTAGTTGCCAAGAAATTGATCATTCATTGCAtgtag 1518 0.4078 MGSLPLSDDRSEIVFFDVETTVPTRPGQGFALLEFGAILVCPRKLTELRNYSTLIRPADLSLISPLSERCNGINAEAVSNAPTFADIANAVYDLLHGRIWAGHNILRFDCVRIRDAFAAINQTPPEPKGTIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTENCWVSPNAVTRSRSNGKSRPEGGLSNMNKDSVLVSSPETIDKNHPILSLATSNTKVAVSNVAHSSTAQSNSFSFRELQDEINRESIRTDVAMDEKSIEYSPDSSASSSVPQACSSSIAILEPEKICISSIDASLVPFYRGSQRIELHHEGFSFKLHCSGLKVRFGISTKFVDSAGRPRLNFVVDPSPSLCNVLDACDNVARKLSSESGSGSDWRPVVIRKEGFFNYPTIRLHIPTAVCEEIAIYATEIYQKESSGSVQRLLFSKFDAAELDSLFKPGTFVDAVFSLDPYDYHQNAGIKLVAKKLIIHCM 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03716 505 MobiDBLite consensus disorder prediction 205 226 - -
Tsu04g03716 505 PANTHER PROTEIN NEN3 6 504 - -
Tsu04g03716 505 SMART exoiiiendus 12 186 IPR013520 -
Tsu04g03716 505 Pfam Exonuclease 14 177 IPR013520 -
Tsu04g03716 505 CDD DEDDh 14 178 - -
Tsu04g03716 505 Gene3D - 5 183 IPR036397 GO:0003676
Tsu04g03716 505 SUPERFAMILY Ribonuclease H-like 11 182 IPR012337 -
Tsu04g03716 505 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 6 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03716 Tsu-Chr4 46196505 46199588 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03716 - - ccaj:109808157 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03716 04 46196505 46199588 Tsu04g03716 04 46196505 46199588 ECH