Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03700 atgaGCTCCATTGCCCTCAAATCATTCATCACCCTCCGTCAACCTTCACCGGAAACCACCCACTTCTCCTTCCGACCAAAACCCATTACTCACCGTCGCAAATTCACTGTCGTTGCCGCAGCAAACAGCCAAAAACTCAATGGCCGTAACCTCCGTGTCGCCGTCATCGGCGGTGGTCCAGCAGGTGGTGCAGCAGCAGAAACACTAGCAAAAGGTGGAGTAGAAACCTTCCTcattgaaagaaaaatggaCAACTGCAAACCATGCGGTGGAGCTATACCTCTTTGCATGGTAGGTGAATTTGACCTTCCATTAGACATCATAGACCGTCGTGTCACAAAGATGAAGATGATTTCACCGTCGAATGTCGCCGTTGATATTGGAAGAACTCTTAAGTCTCATGAGTATATTGGTATGGTGAGGCGTGAGGTTCTTGATGATTATCTTAGGAACAGGGCTAAGGAAAATGGGGCGAATATTATAAATGGgttgtttttgaaaatggatatTCCTAAGGAGAAGAATTCACCTTATGTTCTTCATTATTCTTCTTATGATGGGAAAAGTGGTGGGGTTGGTGAAAAATGTACTTTGGAAGTTGATGCTGTTATTGGTGCTGATGGAGCTAATTCTAGAGTTGCTAAGTCTATTGATGCTGGTGATTATGAATATGCTATTGCTTTTCAGGAGAGGATAAAAATCCCAGATGACAAAATGGCGTATTACGAGGATCTTGCTGAGATGTACGTGGGGGACGACGTTTCTCCCGATTTCTATGGTTGGGTATTTCCAAAATGTGACCACGTAGCTGTTGGCACCGGCACTGTGACACACAAGGGAGACATCAAGAAGTTCCAACTAGCAACAAGGAAAAGAGCCGAGGACAAGATCTTAGGAGGAAAGATCATCCGTGTGGAGGCTCACCCTATACCAGAACATCCAAGGCCACGAAGATTATCAGGAAGGGTCGCACTTGTAGGCGACGCAGCTGGCTACGTGACCAAATGTTCCGGAGAAGGAATCTATTTTGCAGCCAAGAGTGGAAGGATGTGCGCAGAGGAAATTGTACAGGGTTCGGCAAACGGGAAGAGGATGGTAGAAGAAAGTGATTTGAGGAAGTATTTGGAGAAATGGGACAAGACTTACTGGCCTACTTACAAAGTTTTGGATATTCTTCAGAAGGTGTTTTATAGGTCCAATCCTGCTAGGGAAGCATTTGTGGAAATGTGTGCTGATGAATATGTGCAGAAGATGACATTTGATAGTTATTTGTACAAGACTGTTGTGCCTGGGAATCCATTGGACGATATCAAGTTGGCGATCAACACCATTGGAAGCTTGGTTAGGGCTAATGCTCTAAGAAGGGAGATGGACAAACTTAATGTATGA 1389 0.4384 MSSIALKSFITLRQPSPETTHFSFRPKPITHRRKFTVVAAANSQKLNGRNLRVAVIGGGPAGGAAAETLAKGGVETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKSHEYIGMVRREVLDDYLRNRAKENGANIINGLFLKMDIPKEKNSPYVLHYSSYDGKSGGVGEKCTLEVDAVIGADGANSRVAKSIDAGDYEYAIAFQERIKIPDDKMAYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEEIVQGSANGKRMVEESDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVVPGNPLDDIKLAINTIGSLVRANALRREMDKLNV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03700 462 TIGRFAM BchP-ChlP: geranylgeranyl reductase 52 449 IPR010253 GO:0015979|GO:0015995|GO:0045550
Tsu04g03700 462 TIGRFAM ChlP: geranylgeranyl reductase 51 449 IPR011774 GO:0045550
Tsu04g03700 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 52 74 - -
Tsu04g03700 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 199 214 - -
Tsu04g03700 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 335 - -
Tsu04g03700 462 PANTHER OS01G0265000 PROTEIN 39 461 - -
Tsu04g03700 462 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 221 IPR023753 GO:0016491
Tsu04g03700 462 SUPERFAMILY FAD/NAD(P)-binding domain 51 433 IPR036188 -
Tsu04g03700 462 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 39 461 - -
Tsu04g03700 462 TIGRFAM GG-red-SF: geranylgeranyl reductase family 53 355 IPR011777 GO:0016628
Tsu04g03700 462 Gene3D - 50 461 IPR036188 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03700 K10960 - gmx:100779933 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03700 04 46057710 46060794 Tsu04g03700 04 46057710 46060794 ECH