Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03699 ATGGCAGCATCAGCAGCAGCTACTTTTACTATTGGAACTGCCCAAACAGGGAGGTCACTTCCTCAATCAAACCCTTTTGGTTTGAAATTCAATTCACTGGTTAATTTTAAGACCTTCTCTGGTCTCAAGGCCATGTCATCTATAAGATGTGAGTCTGAATCATCTTTCTTTGGCAATGAAACTTGTGCTGCTCTGCGTGCAACTTTTGCGCCCAAAGCTCAAAAGGAAAACCGAAACCTCACCCGCAATTTGCAGCCTCAGGCATCCTACAAAGTGGCGGTTCTCGGTGCTGCAGGAGGAATTGGTCAGCCATTGGCACTTCTCATCAAGATGTCGCCTTTGGTTTCCGACCTGCATCTTTATGATATTGCGAATGTTAAGGGAGTTGCTGCTGATATCAGTCATTGCAACACTCCCTCAAAAGTTGTGGATTTCACAGGTGCTTCTGAGTTGGCAAATTGTTTGAAAGGTGTGGATGTTGTTGTTATACCCGCTGGTGTTCCTAGGAAACCCGGCATGACCCGTGATGACCTTTTCAATATTAATGCCGGTATAGTCAGGGACTTGGTCACCGCCGTTGCAGATAATTGCCCCGGTGCTTTTATTCATATTATCAGTAACCCTGTGAACTCTACAGTTCCTATTGCTGCTGAAATTCTGAAACAAAAGGGTGTTTATGATCCTAAAAAGCTCTTTGGTGTTACTACACTTGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAAAAAGAACCTGAGGCTGATTGATGTTGATGTTCCTGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTCTTGTCAAAGACGAGACCCACAGCAAATTTTACTGATGAAGAAATTGAGGCGCTAACTGTCAGGATTCAAAATGCTGGAACTGAAGTTGTTGAGGCCAAGGCTGGTGCAGGGTCTGCTACTTTGTCAATGGCTTATGCAGCAGCTAGATTTGTTGAATCATCTCTTCGTGCACTTGACGGTGACGCTGATGTGTATGAGTGCTCATTTGTAGAGTCAGATCTGACTGACCTTCCATTTTTTGCTTCAAGGGTGAAGATTGGTAGGAAAGGAGTCGAGGCTTTGATTCCAACTGATCTCCAAGGGTTGAGTGAGTATGAGCAGAAGGCTTTGGAAGCACTTAAACCAGAACTTAAGGCTAGCATTGAAAAGGGGATTGCTTTTGCTCAAAAGCAAACTGTTTCTGCTTAA 1227 0.4442 MAASAAATFTIGTAQTGRSLPQSNPFGLKFNSLVNFKTFSGLKAMSSIRCESESSFFGNETCAALRATFAPKAQKENRNLTRNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSKVVDFTGASELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVTAVADNCPGAFIHIISNPVNSTVPIAAEILKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTRPTANFTDEEIEALTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSFVESDLTDLPFFASRVKIGRKGVEALIPTDLQGLSEYEQKALEALKPELKASIEKGIAFAQKQTVSA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03699 408 SUPERFAMILY LDH C-terminal domain-like 234 401 IPR015955 GO:0003824|GO:0016616
Tsu04g03699 408 Gene3D - 235 406 IPR015955 GO:0003824|GO:0016616
Tsu04g03699 408 ProSitePatterns Malate dehydrogenase active site signature. 234 246 IPR001252 GO:0006108|GO:0016615
Tsu04g03699 408 PANTHER MALATE AND LACTATE DEHYDROGENASE 24 408 - -
Tsu04g03699 408 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 91 402 IPR010097 GO:0006099|GO:0030060
Tsu04g03699 408 CDD MDH_glyoxysomal_mitochondrial 90 401 IPR010097 GO:0006099|GO:0030060
Tsu04g03699 408 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 235 400 IPR022383 GO:0016616
Tsu04g03699 408 Gene3D - 88 234 - -
Tsu04g03699 408 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 24 408 - -
Tsu04g03699 408 Pfam lactate/malate dehydrogenase, NAD binding domain 91 233 IPR001236 GO:0016491
Tsu04g03699 408 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 85 234 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03699 Tsu-Chr4 46053614 46056226 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03699 K00026 - gmx:100814078 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03699 04 46053614 46056226 Tsu04g03699 04 46053614 46056226 ECH