Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03692 ATGTACAACACCCTCATTCGTTCACTCTCTCACTCTTCCACTCCTCTCACTTCCCTCCAACCATTTATTCAATTACTTCGCCACCAAACTCTACTCCCCGACAGCTTCTCATTCGCATTTGCACTCAAAGGGATTGCGAATGATGCTCATTCAAAGAGACCCGGTATTCAGTTACATTCTCAGGCTTTCCGTCATGGGTTTGATGATCATATATTTGTTGGAACGACTTTGATTAGTATGTATGCTGAATGTGGATGTTATCGGTCTGCAAGAaaggtgtttgatgaaatgtctCAACCGAATGTTGTTGCGTGGAACGCTGTGATAACTGCTTGTTTTAGGTGTGGGAATGTGGAGGGTGCTTGGGGTTTGTTTCAAAGAATGCCTATTAGGAATTTGACTTCTTGGAATGTGATGCTTGCTGGTTATGTTAAAGCAGGTGAATTTGGGTTGGCAAGAAAAGTTTTTTATGAAATTCCGATGAGAGATGATGTTTCTTGGAGTACTATGATTGTTGGGTTTGCTCAAGGTGGTTCTTTTGATGATGCTTTTGGGTTTTTCAGGGAGTTGATGCGGGAGGGAATCAGGCCGAGTGAGGTTAGCCTCACTGGAGTGTTATCTGCTTGTGCACAAGCTGGGGCATTTGAGTTTGGTAAGATTTTACATGGGTTTTTGGAGAAAGCTGggtttctttttattgtttcgGTTAATAATGCTCTCATTGATACCTACTCTAAGTGTGGAAATGTTGCTATGGCTAAGGTGGTCTTTCAAAATATGCCAGCGGCGAGGTGCCTTGTCTCTTGGACATCTATGATAGCAGCACTTGCAATGCACGGTCGTGGCGATGAGGCAATCAGGGTTTTTCATGAGATGGAAGAGTCTGGAGTTAGACCAGACGGTGTCACGTTCATATCTCTCCTCTATGCTTGCAGCCATAGTGGTTTGGTTGAACAAGGTTGTGCTTTGTTTTCTAAGATGAAGAATTTCTATGGAATTGAACCCACCATTGAGCATTATGGCTGTATGGTTGATCTGTATGGTCGAGCTGCTATGTTGCGGAAGGCCTATGAGTTTATATGTCAGATGCCAATTTCGCCTAATGTAATCATTTGGAGGACCCTCCTTGGGGCTTGTAGCATTCATGGTAATATCGAATTGGCAGAGCTTGTGAAATCAAGGCTTGCTGAAATGGATCCAAACAACTCTGGTGACCATGTACTGCTCTCAAATGTTTATGCGGTTGCGGGGAAATGGAAGGATGTTGCCGGCATAAGAAGAACAATGATTGAACAGAGCATGAAAAAAGCTCCTGGTTGGAGCATGATTGAAATTGACAAGGTCATTTATGGTTTTGTGGCAGGTGAAAAGCCTAACGAGGTTACAGAAGAGGCCCATCAGAAACTGATGGAAATAATGTTGAGACTCAAAGCAGAAGAAGGTTATGCGCCCCAGGTAAGGAGTGTCTTGCATGAtattgaagaggaagaaaaagaagattcAGTGTCCAAGCACAGTGAGAAGCTTGCTGCAGCTTTTGGAATAGCGAAACTTCCTAAAGGAAGGATTTTAAGAATAGTGAAGAACCTGAGGGTTTGTGGGGATTGCCATACTGTGATGAAGCTGATTTCTAAAGTCTATCAAGTAGAAATCGTTGTGAGAGATAGAAGTCGCTTTCACTCGTTCAAAGGTGGGATATGTTCCTGCAGGGATTACTGGTGA 1722 0.4187 MYNTLIRSLSHSSTPLTSLQPFIQLLRHQTLLPDSFSFAFALKGIANDAHSKRPGIQLHSQAFRHGFDDHIFVGTTLISMYAECGCYRSARKVFDEMSQPNVVAWNAVITACFRCGNVEGAWGLFQRMPIRNLTSWNVMLAGYVKAGEFGLARKVFYEIPMRDDVSWSTMIVGFAQGGSFDDAFGFFRELMREGIRPSEVSLTGVLSACAQAGAFEFGKILHGFLEKAGFLFIVSVNNALIDTYSKCGNVAMAKVVFQNMPAARCLVSWTSMIAALAMHGRGDEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMKNFYGIEPTIEHYGCMVDLYGRAAMLRKAYEFICQMPISPNVIIWRTLLGACSIHGNIELAELVKSRLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKAPGWSMIEIDKVIYGFVAGEKPNEVTEEAHQKLMEIMLRLKAEEGYAPQVRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIVVRDRSRFHSFKGGICSCRDYW 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03692 573 Pfam PPR repeat 165 195 IPR002885 -
Tsu04g03692 573 Pfam PPR repeat 75 98 IPR002885 -
Tsu04g03692 573 Pfam PPR repeat 339 363 IPR002885 -
Tsu04g03692 573 Pfam PPR repeat 135 160 IPR002885 -
Tsu04g03692 573 Pfam PPR repeat 238 262 IPR002885 -
Tsu04g03692 573 Gene3D Tetratricopeptide repeat domain 315 512 IPR011990 GO:0005515
Tsu04g03692 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Tsu04g03692 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
Tsu04g03692 573 PANTHER OS01G0913400 PROTEIN-RELATED 2 514 - -
Tsu04g03692 573 Pfam DYW family of nucleic acid deaminases 481 573 IPR032867 GO:0008270
Tsu04g03692 573 Gene3D Tetratricopeptide repeat domain 219 314 IPR011990 GO:0005515
Tsu04g03692 573 Gene3D Tetratricopeptide repeat domain 133 218 IPR011990 GO:0005515
Tsu04g03692 573 TIGRFAM PPR: pentatricopeptide repeat domain 103 129 IPR002885 -
Tsu04g03692 573 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Tsu04g03692 573 TIGRFAM PPR: pentatricopeptide repeat domain 165 199 IPR002885 -
Tsu04g03692 573 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Tsu04g03692 573 TIGRFAM PPR: pentatricopeptide repeat domain 75 98 IPR002885 -
Tsu04g03692 573 TIGRFAM PPR: pentatricopeptide repeat domain 135 162 IPR002885 -
Tsu04g03692 573 Pfam PPR repeat family 265 312 IPR002885 -
Tsu04g03692 573 Pfam PPR repeat family 100 133 IPR002885 -
Tsu04g03692 573 Gene3D Tetratricopeptide repeat domain 1 132 IPR011990 GO:0005515
Tsu04g03692 573 Pfam E motif 382 444 IPR046848 -
Tsu04g03692 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Tsu04g03692 573 PANTHER - 2 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03692 Tsu-Chr4 45977344 45979065 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03692 55 573 Glycoside Hydrolase AT3G49170 37.390 8.14e-116 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03692 - - gmx:106796767 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03692 04 45977344 45979065 Tsu04g03692 04 45977344 45979065 ECH