Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03669 ATGGTGATTAGACCCCAAACGAAAACCAATCACACAAACAACAAAGCACTAACCTTCCTCAAGCCGCCCTTGCTTTTCattcttcattcattcattctctcacacacaaaaacaaacaaacaaccccTTCCATCGAATCGATCTTACTCATCGCTTTCACATCTTCTACCAGACTCACACTACCCCAACAAGGTGGTAGGGATGTCGACTCCTGCTAGGAAGAGACTGATGAGAGATTTTAAGAGGTTGCAACAAGACCCACCTGCAGGAATTAGTGGTGCTCCTCAGGATAACAACATTATGCTGTGGAATGCTGTTATATTTGGTCCAGATGATACTCCTTGGGATGGAGGCACGTTTAAGTTGACTCTTCAATTTTCCGAGGATTATCCAAACAAGCCGCCCACTGTACGATTTGTCTCCCGGATGTTTCATCCAAACATTTATGCAGACGGAAGTATCTGTCTCGATATATTGCAAAATCAGTGGAGTCCTATATACGATGTAGCTGCGATACTAACTTCTATCCAGtCATTGCTTTGTGATCCCAATCCAAATTCTCCTGCAAACTCTGAAGCGGCTCGAATGTTCAGTGAGAACAAGCGTGAGTACAATCGCAGAGTTCGGGAAATTGTGGAGCAGAGTTGGACAGCCGACTAA 660 0.4152 MVIRPQTKTNHTNNKALTFLKPPLLFILHSFILSHTKTNKQPLPSNRSYSSLSHLLPDSHYPNKVVGMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03669 219 CDD UBCc 74 212 IPR000608 -
Tsu04g03669 219 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 144 159 IPR023313 -
Tsu04g03669 219 Gene3D Ubiquitin Conjugating Enzyme 66 215 IPR016135 -
Tsu04g03669 219 SUPERFAMILY UBC-like 61 217 IPR016135 -
Tsu04g03669 219 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 58 219 - -
Tsu04g03669 219 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 58 219 - -
Tsu04g03669 219 Pfam Ubiquitin-conjugating enzyme 75 211 IPR000608 -
Tsu04g03669 219 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 71 217 IPR000608 -
Tsu04g03669 219 SMART ubc_7 74 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03669 Tsu-Chr4 45730095 45734515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03669 74 187 Miscellaneous Gene Families AT1G17280 31.092 3.95e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03669 K10573 - fve:101312627 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03669 04 45730095 45734515 Tsu04g03669 04 45730095 45734515 ECH