Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03618 ATGTCGTCACctcaaaacataaaacaaaaggTATTCACATGTCTAACCAAACTCTCCGACCGCGACACTCACTCCCTTGCCGCCACAGAACTCATTACAATTGCTCGGAATCTTGACACAACCACCGTACCGGTTTTCCTCTCTTGCATGTACTCCACCGACGCTTCCGACAAATCTCCGGTACGGAAGCAATGTGTTCAACTCTTTGGATTACTCTCAGAAACACACGGCAACGCTCTTTCTCCTTATCTTTCGAAGATCATCGCCAACGTAATTCGTCGCCTCCGTGATTCGGACTCGTCGGTCCGATCCGCATGCGTGAATTCCGTTTCAGCATTGGCTTGCCACGTCACGAAGCAACCGTTTCTTTGCTTTCTAAAACCGTTATCAGAAGCTCTGTTCACAGAGCAGGATCAGAACGCGCAAATTGGAGCTGCGCTTTGTTTAGCTTCGGCGATCGATGGAGCTCCGGATCCGGACTCAGCTAGGCTGGCAAAGCTGTTACCGAAGTTCCAGAAGCTTCTTAAGCGCGAAGTGTTTAAGGCGAAACCGGCGTTGTTGACGCTGATCGGAAGCGTAGTTGAAGCTGGTGGCGCTTCTGGACAAGCTTCCTTGAAGAATTTGGTTCCGTGTTTGGTGGAATCTTTGAGTAACCGCGATTGGGCGGTAAGGAAGTCTGCGGCGGAGACGCTGCTGGTGTTGGCCAACGTTGAGAGAGAATTCTTGACGGAATTTAAGTCTgattgtttgaaagtttttgagAATCGACGATTTGATAAGgTAAAATTGGTTCGTGAAGTTATGAATCAGATGTTGGAAGCTTGGAAGCATATCCCTGATGTTTCAGATGAATTTTCCCCACCTCCTAAATCGCAATCTTCTTCAAAAGAGAATGCTAGTGATGGGCGATATCCTCCGATCTCGCAAAATTCTTGTAATCCTGGTTCAGTAATGGCGAATCTGCGAAGGAAATCTGCTCCTGCTAGCAGATTCAGTCTACCAGATAGTTCTTCTGCTAGCAATGGCAAGAATGAGAGTGCTTTTAGTAGTAACAAGAGAAGGAGTTCGGGTGTTTCACGAAAATTAAACCAGAAGAATTGGGATGTTCAAGTTGCCATGGCTGATCAGGGTGATCTCCAGGAgatgaatgaaaataaaactcCTTTGGAAATGAATCGGgcacttttaaataaaaattccgACGATAAAATGAAAAAGCACAGTGGTTCCAAAGCTGGATCTCGTGTTGTTCCGTATCATGAAGAGAGTCAAGACGCAGTTCCTGTCAGTAATGTCCCCAAAGATCTTTTTAGGAATGACAAAGAGAGCGAAGAATTATCTTTGATTCGCAACCAGTTACAGCAAATTGAGAAGCAACAGTCCAGTTTACTTGATCTTCTGCAGAAATTCATTGGAAGCTCACAAAATGGAATGCGATCTTTAGAAACCCGTGTTCATGGTCTTGAGTTGGCATTGGATGATATCTCTTATGATTTGGCTGTATCAAATGGAAGGATGACTAATTCTAATGTCCCTCGCAATTCATGTTGCTTGCTACCTGGAGCAGAATTTTTGAGCTCCAAATTCTGGAGGAAATCACAGGGTCAGTATTCATCCCCACGACTCTCTCGACGTGGTGGTGCTCCATCACTCGCTGCCATGCACTACACAGCTGGCAGAAATGCTGAACCTAACTTTACAAGCCAAAGATTCAGGCTTGATGGAGGTTTTATCACTAATCCTCTGGCAGAGGTACACACTAATTCAAGGGATTTTGCTTGA 1782 0.4371 MSSPQNIKQKVFTCLTKLSDRDTHSLAATELITIARNLDTTTVPVFLSCMYSTDASDKSPVRKQCVQLFGLLSETHGNALSPYLSKIIANVIRRLRDSDSSVRSACVNSVSALACHVTKQPFLCFLKPLSEALFTEQDQNAQIGAALCLASAIDGAPDPDSARLAKLLPKFQKLLKREVFKAKPALLTLIGSVVEAGGASGQASLKNLVPCLVESLSNRDWAVRKSAAETLLVLANVEREFLTEFKSDCLKVFENRRFDKVKLVREVMNQMLEAWKHIPDVSDEFSPPPKSQSSSKENASDGRYPPISQNSCNPGSVMANLRRKSAPASRFSLPDSSSASNGKNESAFSSNKRRSSGVSRKLNQKNWDVQVAMADQGDLQEMNENKTPLEMNRALLNKNSDDKMKKHSGSKAGSRVVPYHEESQDAVPVSNVPKDLFRNDKESEELSLIRNQLQQIEKQQSSLLDLLQKFIGSSQNGMRSLETRVHGLELALDDISYDLAVSNGRMTNSNVPRNSCCLLPGAEFLSSKFWRKSQGQYSSPRLSRRGGAPSLAAMHYTAGRNAEPNFTSQRFRLDGGFITNPLAEVHTNSRDFA 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03618 593 Coils Coil 439 459 - -
Tsu04g03618 593 ProSiteProfiles HEAT repeat profile. 208 244 IPR021133 -
Tsu04g03618 593 Pfam HEAT repeat 208 236 IPR000357 GO:0005515
Tsu04g03618 593 MobiDBLite consensus disorder prediction 280 364 - -
Tsu04g03618 593 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 4 591 - -
Tsu04g03618 593 MobiDBLite consensus disorder prediction 330 364 - -
Tsu04g03618 593 Gene3D - 3 400 IPR011989 -
Tsu04g03618 593 MobiDBLite consensus disorder prediction 401 427 - -
Tsu04g03618 593 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 4 591 IPR033337 GO:0005874|GO:0008017
Tsu04g03618 593 SUPERFAMILY ARM repeat 5 273 IPR016024 -
Tsu04g03618 593 MobiDBLite consensus disorder prediction 286 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03618 Tsu-Chr4 45240684 45243926 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03618 - - gmx:100789197 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03618 04 45240684 45243926 Tsu04g03618 04 45240684 45243926 ECH