Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03617 ATGGTTTCCGATTCAATCGCCGCCGTTCCGATTCCCTCCGCCGCGAACACTAAGAACCCTGGCAAAAAGAAGAGGACCAATAGGTCCGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGCGAACAATGGCTATCTCAAGGTGCGGTCAAGAATAAGGGTTGCAAGGATGGAATGGATGATGACGTTCACGTGCGGGAGAAACATGGCAAGCAAGAATTGGAGAAACTGGAGACAAGACGTAGAGGTGAAGAGATTGATGTGTTGATCCATCAAGACAGTGATTCTGAATCGCCGTCGAACAGTCCTGTAAGTCCTAATAGTAGTGTTTTGTGTGGTAATGATTCTGGGACGAATTTTACTGGTAGCAGCAGAGGTGGAAGCAGTAGTAGTAGTTCTAGCAGTGGTGGATGTTGCTCTGGGAATATTACGgaagaagaggatgaagaagtGGAAGAAGAGGATGATGGATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCCGCCGATGAAAAGCATCAAAACTCACCCCACGATGAACCCGTTGTGGAAAGGGATTCTTCACAATCTTGTGAAGTGACTAATGGTTCGGGTTTAGGTTATCCGAATTCCAAACCAGGGAGTGGTGGAATGGTTCCCTGGGGTTCTGCTAATGGCAGAGCTTGGAGGGCTGATGATGCTTTTCGCCCTCAGACTCTGCCCAATCTTTCGAAGCAGCACAGTATGCCAAATCCTGATCGGTATTTTGGAGGAGGGGGTCCCTGGTGTCGCACTTCTGTGCCATCGAATTGTCCAATTTGCTGTGAGGATCTTGATTTAACGGACACCAGTTTTCTTCCGTGCAATTGTGGTTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATTCTTGAGCAAGATGCTCGTTGTCCTGGTTGCAGGAAGCAATATGAGTGTGAACCTATCGAGACAGAAGCAAGTGTGCATGGTGGTAGCCTTACTCTTCGGTTGGCACGTTCTGTTAGCATGATCGAAAGGTCTTGA 1026 0.4717 MVSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKNKGCKDGMDDDVHVREKHGKQELEKLETRRRGEEIDVLIHQDSDSESPSNSPVSPNSSVLCGNDSGTNFTGSSRGGSSSSSSSSGGCCSGNITEEEDEEVEEEDDGCLDDWEAVADALAADEKHQNSPHDEPVVERDSSQSCEVTNGSGLGYPNSKPGSGGMVPWGSANGRAWRADDAFRPQTLPNLSKQHSMPNPDRYFGGGGPWCRTSVPSNCPICCEDLDLTDTSFLPCNCGFRLCLFCHKRILEQDARCPGCRKQYECEPIETEASVHGGSLTLRLARSVSMIERS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03617 341 MobiDBLite consensus disorder prediction 172 210 - -
Tsu04g03617 341 MobiDBLite consensus disorder prediction 172 188 - -
Tsu04g03617 341 Pfam RING/Ubox like zinc-binding domain 266 312 - -
Tsu04g03617 341 ProSiteProfiles Zinc finger RING-type profile. 266 308 IPR001841 -
Tsu04g03617 341 MobiDBLite consensus disorder prediction 143 159 - -
Tsu04g03617 341 SUPERFAMILY RING/U-box 264 317 - -
Tsu04g03617 341 MobiDBLite consensus disorder prediction 189 204 - -
Tsu04g03617 341 CDD mRING-HC-C4C4_CNOT4 266 309 IPR039515 -
Tsu04g03617 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 323 IPR013083 -
Tsu04g03617 341 MobiDBLite consensus disorder prediction 1 159 - -
Tsu04g03617 341 MobiDBLite consensus disorder prediction 54 92 - -
Tsu04g03617 341 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 16 339 IPR039780 GO:0004842|GO:0030014
Tsu04g03617 341 MobiDBLite consensus disorder prediction 93 141 - -
Tsu04g03617 341 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03617 Tsu-Chr4 45222555 45224514 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03617 - - var:108330419 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03617 04 45222555 45224514 Tsu04g03617 04 45222555 45224514 ECH