Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03604 ATGATTCCTCATCGCTACTATTCCGCATGTTTCCTTCTCTTCCTCCTCCTACTTTCcactttctctttctctcactgCTCTACCAAGAAAAAACGCATGAGAGAAAAAGTCCGCAAGATGTTTCATCATGCTTATGACAACTATATGACTCATGCATTTCCGCATGATGAGCTAAAACCTCTCACGAAAACTTTCACCGATTCCCTAAGCGAGCTAGGAAATTTGAAGCTTGAACGTTTGCCTCAAGATTACAATGGCTCTGCCCTTTCGCTAATTGAATCGCTATCTAGCCTTGTTATTATGGGAAACAATACCGAATTCGAGAAGGGAGTGCGCTGGCTTTCAGAAAATTTAACATTTGATGTTGATGCTCGCATAAATCTTTTTGAGTGCAACATTAGAGTTCTTGGAGGACTTGTCTCTGCTCATTTACTGGCATCTGATTCTTCAAAGAAGTTACTACAAGGATCGTATAATAATCAGCTACTAGGTCTGGCTGAAGATTTAGGGAAACGTTTTCTACCTGCATTCAATACGCCCACTGGATTACCCTATGCGTGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTGATTCTTGAAATGGGTGCTTTATCAAAATTGACTGGTGATCCCAGATATGAATCAGTAGCTTTACGAGCTCTCCGTAAGCTATGGAGTATGCAGAgctcattaaaattatttggaaCCACACTTGATGTGTCAACAGGGCAATGGATTGAACATTCTTCGGGAATTGGAGCTGGGGTAGATTCCTTCTATGAATATCTACTTAAAGCACATATCCTTTTCGGAAAGGAGGACTTTTGGAGAATGTTTCATTCTGCTTATGTTGCTGTGCAAAAGCATTTCAGACACGGTCCCTGGTACCATGAAGCTGATATGAGGACAGGAAGAGCAACTTATTGGCAGCTTACGAGTCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTATTGGGGATATATCTGCTGCTAATTCATCTCACCGTGAGTTCTTCCATGTGTGGAAAAGATTTGGTGTGCTACCAGAGAGGTATTTGCTGGACCATCAGATGCTTCATCCAACTGAAAAATATTATCCATTACGCCCGGAGTTTGCTGAGTCAACATTCTACTTATATCAAGCTACTAAAGATCCATGGTATCTTGAAGTCGGCGAATTAATAATCAATTCCCTTAATATATACTCTAGAGTAGAAGGTGGATTTGCAAGCATCAAGGATGTGACAACTATGCAGCTGGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGCAAATATTTATATCTTCTCTTCGATGATTCATTTTTGCTCAAGAGTAATTACGTATTTACCACTGAAGGTCATCCCCTTCCGGTATTAAGCACTTGGCATGAAGAGCTTCCAGAAAGTTATATTCCAACTAATTGGACCACCCTGAAGAAACAACCAACAAATCGAGCCAGTGCAATGTCGTTGCAAGTATGTCCTGCTATGACTTTAAATTCTGGTCAACATATAGAGAGTGCTTGCCACATCTCCGACGTTCGCATTGACCACAAATGTTTGACTGATGAAGATTGTGGAGTTGATGCAACTACATGCAGAAGAAGATCATGTAGCATGGCTGGTTATTGTGGGCTATGGCTCTTCATTATTTGA 1704 0.3996 MIPHRYYSACFLLFLLLLSTFSFSHCSTKKKRMREKVRKMFHHAYDNYMTHAFPHDELKPLTKTFTDSLSELGNLKLERLPQDYNGSALSLIESLSSLVIMGNNTEFEKGVRWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKKLLQGSYNNQLLGLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKLTGDPRYESVALRALRKLWSMQSSLKLFGTTLDVSTGQWIEHSSGIGAGVDSFYEYLLKAHILFGKEDFWRMFHSAYVAVQKHFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDISAANSSHREFFHVWKRFGVLPERYLLDHQMLHPTEKYYPLRPEFAESTFYLYQATKDPWYLEVGELIINSLNIYSRVEGGFASIKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFLLKSNYVFTTEGHPLPVLSTWHEELPESYIPTNWTTLKKQPTNRASAMSLQVCPAMTLNSGQHIESACHISDVRIDHKCLTDEDCGVDATTCRRRSCSMAGYCGLWLFII 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03604 567 Pfam Glycosyl hydrolase family 47 40 473 IPR001382 GO:0004571|GO:0005509|GO:0016020
Tsu04g03604 567 Gene3D - 23 484 IPR012341 GO:0005975
Tsu04g03604 567 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 22 565 IPR044674 GO:0004571|GO:1904380|GO:1904382
Tsu04g03604 567 SUPERFAMILY Seven-hairpin glycosidases 31 487 IPR036026 GO:0004571|GO:0005509|GO:0016020
Tsu04g03604 567 PANTHER ALPHA-MANNOSIDASE I MNS5 22 565 - -
Tsu04g03604 567 PRINTS Glycosyl hydrolase family 47 signature 175 194 IPR001382 GO:0004571|GO:0005509|GO:0016020
Tsu04g03604 567 PRINTS Glycosyl hydrolase family 47 signature 323 339 IPR001382 GO:0004571|GO:0005509|GO:0016020
Tsu04g03604 567 PRINTS Glycosyl hydrolase family 47 signature 40 60 IPR001382 GO:0004571|GO:0005509|GO:0016020
Tsu04g03604 567 PRINTS Glycosyl hydrolase family 47 signature 266 283 IPR001382 GO:0004571|GO:0005509|GO:0016020
Tsu04g03604 567 PRINTS Glycosyl hydrolase family 47 signature 125 143 IPR001382 GO:0004571|GO:0005509|GO:0016020
Tsu04g03604 567 PRINTS Glycosyl hydrolase family 47 signature 380 404 IPR001382 GO:0004571|GO:0005509|GO:0016020
Tsu04g03604 567 PRINTS Glycosyl hydrolase family 47 signature 439 459 IPR001382 GO:0004571|GO:0005509|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03604 Tsu-Chr4 45112863 45117362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03604 13 563 Glycoside Hydrolase AT1G27520 77.046 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03604 K10084 - gmx:100793674 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03604 04 45112863 45117362 Tsu04g03604 04 45112863 45117362 ECH