Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03598 ATGTACGGCCCGAGGGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGACCAGGCAGCTTTCAACATTATGGATATGCTGGTGGCTTCCAGCCCCCTCCTCCTTTTCCTGTGGTTCGTCTCAGGGGGCTTCCGTTTAACTGCACAGACATTGACATTTTGAAGTTCTTTGCTGGTCTGACCATTGTCGATGTGCTGCTGGTCAACAAGAATGGACGCTTCTCTGGAGAGGCATTTGTAGTCTTTGCTGGAGCAATGCAGGTTGAGTTTGCTTTACAGAGGGATCGACAGAACATGGGGCGCAGATATGTGGAAGTCTTCAGGTGTAAGAAGCAGGATTATTACAATGCTGTTGCTGGTGAGGTCAGTTACGAAGGAATATATGACAACGATTACCATGGAAGCCCTCCTCCCTCCAGGTCCAAGAGGTTCAGCGATAAAGACCAAATGGAATACACTGAGATATTGAAGATGCGTGGACTTCCATTCAATGTGACCAAACCTCAAGTTATTGAGTTTTTTAAAGATTACAAGCTGATAGAAGATAGGGTACACATTGCATGTCGCCCAGATGGTAAAGCTACTGGAGAGGCATATGTAGAGTTTGTTTCACCAGATGAGGCTAAGAGAGCAATGTTCAAGGATAAAATGACCATTGGATCGAGGTATGTGGAACTGTTTCCTTCTACACCAGATGAAGCTAGACGTGCTGAGTCAAGGTCAAGGCAGTAA 798 0.4712 MYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGPGSFQHYGYAGGFQPPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKNGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEVSYEGIYDNDYHGSPPPSRSKRFSDKDQMEYTEILKMRGLPFNVTKPQVIEFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03598 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 246 IPR000504 GO:0003723
Tsu04g03598 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 124 IPR000504 GO:0003723
Tsu04g03598 265 Gene3D - 160 265 IPR012677 -
Tsu04g03598 265 SUPERFAMILY RNA-binding domain, RBD 175 262 IPR035979 GO:0003676
Tsu04g03598 265 Gene3D - 59 142 IPR012677 -
Tsu04g03598 265 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 265 - -
Tsu04g03598 265 CDD RRM_hnRNPH_ESRPs_RBM12_like 60 129 - -
Tsu04g03598 265 CDD RRM_hnRNPH_ESRPs_RBM12_like 177 249 - -
Tsu04g03598 265 SMART rrm1_1 60 129 IPR000504 GO:0003723
Tsu04g03598 265 SMART rrm1_1 177 249 IPR000504 GO:0003723
Tsu04g03598 265 SUPERFAMILY RNA-binding domain, RBD 50 138 IPR035979 GO:0003676
Tsu04g03598 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Tsu04g03598 265 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03598 Tsu-Chr4 45063946 45066240 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03598 K12898 - qsu:112005513 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03598 04 45063946 45066240 Tsu04g03598 04 45063946 45066240 ECH