Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03540 ATGCCAAAGCGAAACTCCCTCGTTGTTCTCTCATCCGATGACGAAGAACTGAACACTCCCAAAGCTCGTTCATTCAGTGGAACCCGTACAAAGCCCAAGCCCAAGACCACGGCCTCCAGAGGAAGGAACAAGAAAGCCCGTGTTTCCAGTTCTGCGCCTCGTTCCTCTAAGCTTTACGAGataaactTGTTTGATGATGACTTCAATCAAGTGTTTACTGGGTCAAAGGTATTCGCTGGTACTCAAAGGAACACTGCAGGGGAGCTATGGGTTGATAAATACAAGCCTCATTCACTGGAAGAACTTGCTGTTCACAAGAAAAAGGTTGAAGAAGTTAAGACGTGGTTTGAAGAAAGGTTGAAACCTTCAAagGATGTCTACAGAAATAACGTTCTTGTCGTCACTGGGCAGGCAGGAGTTGGAAAATCTGCTGCTCTTCATGTAATTGCTTCTCATCTGGGTGCAATAGTGTGTGGATGGAACACACCTACGCCTGTAATTTGGCAAGAGCATCTTTATAACTCTGGAACAGAGACAAAGTACACTTCCAAGTTGGATGAATTTGTAACTTTTGTTGAGAGAATACGGAAATATGGATTAATACCAACATCCTTTACTGGGGAGTCAAAGCCTTCCATCATATTTTTAATAGATGATCTTCCCTTGATGCATAATAAAGCTGCTTTAGGAAGACTTAAAGATTGTTTGCATCTTTTGGTGCACACAACTCAGATACCCACAGCCATATTGGTCACAGATTATGGCAATACTGATTCAGCAGATTTTAATGCACGGTCCGTGGAAGAACTTAAGACATCTCTAGAAAGTTCTGGGGCTTGTAAGATTGCATTCAATCCAATTACAGTTAATTCTATTAAGAAAGTACTTTTTAGAATATGTCAAATGGAGCAGTGTGATGTGACTGCTGACCATGTTGATTTAATAGCACAAGCAAGTGGAGGTGACATCAGACATGCAATTACTTCTCTACAGTTTTTCTGTCTGAATCCAAATCAAGTGTGTTCTTTGTCTCAATCTACTCGCAGTCCTCATGCATTAAAAGAGGAAAGTAAAAAACCAGTTGAATTAGACGATGGATCTTCCTTGTACTTCGGAAGAGATGAGACTCTATCTTTGTTTCATGCCTTGGGGAAATTTTTGCACAATAAGAGGGAGACTGGAGTTGCAGCAGAATATAACCCAAATAACTTTCTCATACAAGAAAGATTTTCAAGATTACCTTTAAAAATGGATGTCCCGGAGAAGATTCTTTGTCAAGCCCATGTGCAACCTGGTCCAGTTGCTGATTTTCTGCACGAAAATGTTCTGGATTTTTTGAATGATGAGGCAGTAGAGGATGCATGGGTTTTGTCTTCATATCTAGGTGATGCTGACATCCTTCTTGCTAAGCTTCGGGGAATGGTATCTAGTTATAATGAGGCAGAGAGTATTTTACAGTCAGCGGCTGCGTCAATTGCTGTTCGTGGGGTGTTATTTGGAAATTCTTGTCCACTTTCCTCCAGGTTATCAGTTATATGCATGAAGTCTTCTCTGCAATGCAAAGCTTTATGTTTTTCTGTAAGATTCTTATCAGTTTACTATTACAGGTGGCATGCAATCCGTCGACCAAAGCTCTGGCAGGTTGAGAGAGAATCGTCATACCATAAGAATGAGATGTTTAGGCAGAGAATCCCTGCTTGTAATCGTTCAAGTTCTTATCATATGTCAATTATGGCCACAGAATACATGCCTATGTTTAAATTGCTTGGAAATAGGGTTGGTAGTGGATATAATGAACTACATCAGGAATCTGTGCAGAACTTGGATACAGAAAATTTTGATATTGACAAAATGAGTTTAGATGATGAAGCAATGGAGATCTCCGAAGATGACATAGAAGATTGGTAG 1908 0.4025 MPKRNSLVVLSSDDEELNTPKARSFSGTRTKPKPKTTASRGRNKKARVSSSAPRSSKLYEINLFDDDFNQVFTGSKVFAGTQRNTAGELWVDKYKPHSLEELAVHKKKVEEVKTWFEERLKPSKDVYRNNVLVVTGQAGVGKSAALHVIASHLGAIVCGWNTPTPVIWQEHLYNSGTETKYTSKLDEFVTFVERIRKYGLIPTSFTGESKPSIIFLIDDLPLMHNKAALGRLKDCLHLLVHTTQIPTAILVTDYGNTDSADFNARSVEELKTSLESSGACKIAFNPITVNSIKKVLFRICQMEQCDVTADHVDLIAQASGGDIRHAITSLQFFCLNPNQVCSLSQSTRSPHALKEESKKPVELDDGSSLYFGRDETLSLFHALGKFLHNKRETGVAAEYNPNNFLIQERFSRLPLKMDVPEKILCQAHVQPGPVADFLHENVLDFLNDEAVEDAWVLSSYLGDADILLAKLRGMVSSYNEAESILQSAAASIAVRGVLFGNSCPLSSRLSVICMKSSLQCKALCFSVRFLSVYYYRWHAIRRPKLWQVERESSYHKNEMFRQRIPACNRSSSYHMSIMATEYMPMFKLLGNRVGSGYNELHQESVQNLDTENFDIDKMSLDDEAMEISEDDIEDW 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03540 635 Gene3D - 87 268 IPR027417 -
Tsu04g03540 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 335 IPR027417 -
Tsu04g03540 635 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 35 635 - -
Tsu04g03540 635 MobiDBLite consensus disorder prediction 1 52 - -
Tsu04g03540 635 CDD HLD_clamp_RFC 287 332 - -
Tsu04g03540 635 Pfam Rad17 P-loop domain 85 260 - -
Tsu04g03540 635 Gene3D - 288 359 - -
Tsu04g03540 635 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 35 635 IPR004582 GO:0006281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03540 K06662 - gmx:100799826 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03540 04 44595954 44601617 Tsu04g03540 04 44595954 44601617 ECH