Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03539 ATGTTGCAAGAGATGTGGAATGCTCCTCCTGGTTTCAGACCCTCCAAATCTGCACCATCTTCACCTGCAAAACCTCTTGGTGTTCCTAGAACTCGTTCTGAATCTTTTCATATCACTCATAAGGTTCCTGTTGGTGATTCTCCTTATGTTAGAGCCAAAAATGTTCAGtTGGTGGAAAAGGATCCGGAGAGAGCAATTCCGTTGTTTTGGGCAGCGATAAACGCGGGAGATAGAGTGGATAGTGCTTTGAAAGATATGGCTATTGTTATGAAGCAACAGAATAGGGCTGAAGAAGCTATTGAAGCTATTAAGTCACTAAGAAGTAGATGCTCAGATCAAGCACAAGAATCTCTTGATAATATCCTCTTGGATCTCTATAAGAGATGTGGTAGACTTGATGACCAAATTGGTTTATTGAGGCACAAGCTGTATTTAATCCAACAAGGGTTGGCTTTCAATGGCAAGCGCACAAAGACTGCTAGATCTCAAGGGAAGAAGTTTCAAGTCTCAGTGGAACAAGAAGCCACTAGATTATTGGGAAACTTAGGATGGGCACTGATGCAGCAAAACAACTACATCGAAGCAGAAGAAGCCTATCGTCGCGCACTTTGTCTAGCTCCGGACAACAACAAGATGTGCAATTTAGGAATTTGTTTGATGAAACAAGGAAGAATAGCTGAAGCTAAAGAAACTCTTCATAGAGTGAAACCTGCTGTTACAGATGGACCAAGAGGCTCAGATTCTCATCTGAAAGCATATGAAAGAGCACAACAAATGCTCAGAGACCTCGAGTCCGAAATGATGAACAAAGGAGGAGTTGATAGGCTTGAACAAAGTAGACTCTTTGAAGCTTTTCTTGGTTCTTCATCAATTTGGCAACCTCAACCTTGTAAGGATCAAATTCACACAAGCTTGCCACCAATTAGAACAACCTCAACAACAATAACTCAAGATGAATTTGGAGATGAAAACATCAATTCCAACATAGTGAAAAATCACACAGCACAACCACACAAGTTTACTCCTTTGGTGAACAACTCACTCAATGTTGCCGCTCCACCATTTTATGCAGCGAAATCGTCTTTGAAGGAATCAGtgacaaaagaaacaaatgaaaatttgaatttctctGAGACACTGAAGAGAACAAGGTCTGGAAATGCTGCAGGATCGATGAGAGTAGTGAATGATGTGAACAGCAACAAGGTGAATGTGGAATTAGGTGTGCCTGTGCCTGGGAGCAAAGCTAGAAGATTGTCATTTGAGAAGAATAAGTTGTGTGATATGTTACCTGACACTAAGGATTTTGAAGATGCTATTCTTTCTGCTATTTTTGCGCCTTCAAATGAGTTGGAGAATGAAAATGCTACCACTTCTGGGATTTGCTCGAAGAAAGTTGACAAGAGGAGGCTTAAGGTTTTCCAAGATATTACACTATCATCTTTGAGTCCAAAGGCTAAGGCTTGA 1467 0.4029 MLQEMWNAPPGFRPSKSAPSSPAKPLGVPRTRSESFHITHKVPVGDSPYVRAKNVQLVEKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIGLLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALCLAPDNNKMCNLGICLMKQGRIAEAKETLHRVKPAVTDGPRGSDSHLKAYERAQQMLRDLESEMMNKGGVDRLEQSRLFEAFLGSSSIWQPQPCKDQIHTSLPPIRTTSTTITQDEFGDENINSNIVKNHTAQPHKFTPLVNNSLNVAAPPFYAAKSSLKESVTKETNENLNFSETLKRTRSGNAAGSMRVVNDVNSNKVNVELGVPVPGSKARRLSFEKNKLCDMLPDTKDFEDAILSAIFAPSNELENENATTSGICSKKVDKRRLKVFQDITLSSLSPKAKA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03539 488 Coils Coil 246 266 - -
Tsu04g03539 488 Pfam Tetratricopeptide repeat 186 244 - -
Tsu04g03539 488 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 481 - -
Tsu04g03539 488 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 481 IPR044961 -
Tsu04g03539 488 SMART tpr_5 176 209 IPR019734 GO:0005515
Tsu04g03539 488 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Tsu04g03539 488 SUPERFAMILY TPR-like 59 234 IPR011990 GO:0005515
Tsu04g03539 488 Coils Coil 89 116 - -
Tsu04g03539 488 Gene3D Tetratricopeptide repeat domain 54 238 IPR011990 GO:0005515
Tsu04g03539 488 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03539 Tsu-Chr4 44593152 44595614 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03539 - - gmx:100788369 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03539 04 44593152 44595614 Tsu04g03539 04 44593152 44595614 ECH