Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03504 atggggGAAGGTAGAGAAGGTGATTGGGAGTGTAGTAGTTGCAACAACAGAAACTACGCTTTCAGATCATTCTGTAATCGTTGCAAACAACCACGTCTTCTCGTTGATACCAAAACCCCTGCTGATTCCAAGTGGCTTCCTCGTATCGGCGATTGGATCTGCACCGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAGAAGTGCGGACAACCAAAGGAAGTAGCAGCCATGCCAGCAATTGCAATGACTGGAGCATCCTTCCCTGCTTATCCACACTATTTTTCCAGGGCTCCCGGAGGACCAGAACAAAGGATGAATATTGGATTGATTGGAAACGGTGTGCCACCGCAGTCgttgaatttgaattataatTGGCCTGTTACTGGAGCAGGGAAGTTTGGTGTTCATCCAGTTTCCATATGGCCACCAGGTGCAAATTATAGTTCTGGACATCCTTTTGAAAATTCAACTAGTCAGAACCCATCTACACCAAATGGTTGGCGCAATGGGGACTGGGTCTGTAACTGCGGCTTTCACAATTACTCTTCACGCTCACAATGTAAAAAATGCAATGCTTCTCCACCAGCACTTGGCACAAAACGGTTAGCTTCTGAAGAATTGGTTTATGACTGGGATAACAAGAGATTGAACGTAGGACCTACAAATGATCAGCAGCAAACTTATTCAAGTTTAGAGCTAGTAGGGACCAGTGCAGAACCAAAACCTGCAATCTTCCCTCCTTACGCTGGCATTAACTCTAGTTCGGCACCAATTTTGCCAATGCCTTCACTCTTTCCAATTCCACCTCAAGTTTCTTCTGCCGCACTCCTTGGAAAAGGAGCTAAGCAATGGCGAAGTGGTGATTGGATGTGCACAAATTGCAACAATCATAATTATGCATCCAGACTAGAGTGTAACAGGTGTAAGACAGTCAGAGTGGCACCGATGCAACCCGTCAATGTTGTGTAA 978 0.4448 MGEGREGDWECSSCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEVAAMPAIAMTGASFPAYPHYFSRAPGGPEQRMNIGLIGNGVPPQSLNLNYNWPVTGAGKFGVHPVSIWPPGANYSSGHPFENSTSQNPSTPNGWRNGDWVCNCGFHNYSSRSQCKKCNASPPALGTKRLASEELVYDWDNKRLNVGPTNDQQQTYSSLELVGTSAEPKPAIFPPYAGINSSSAPILPMPSLFPIPPQVSSAALLGKGAKQWRSGDWMCTNCNNHNYASRLECNRCKTVRVAPMQPVNVV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03504 325 ProSiteProfiles Zinc finger RanBP2 type profile. 288 317 IPR001876 -
Tsu04g03504 325 PANTHER OS04G0110600 PROTEIN 272 324 - -
Tsu04g03504 325 SUPERFAMILY Ran binding protein zinc finger-like 166 196 IPR036443 -
Tsu04g03504 325 SUPERFAMILY Ran binding protein zinc finger-like 282 317 IPR036443 -
Tsu04g03504 325 Pfam Zn-finger in Ran binding protein and others 288 315 IPR001876 -
Tsu04g03504 325 Pfam Zn-finger in Ran binding protein and others 5 32 IPR001876 -
Tsu04g03504 325 Pfam Zn-finger in Ran binding protein and others 48 76 IPR001876 -
Tsu04g03504 325 PANTHER ZINC FINGER PROTEIN 272 324 - -
Tsu04g03504 325 PANTHER OS04G0110600 PROTEIN 169 226 - -
Tsu04g03504 325 PANTHER ZINC FINGER PROTEIN 3 136 - -
Tsu04g03504 325 SMART zf_4 290 314 IPR001876 -
Tsu04g03504 325 SMART zf_4 7 31 IPR001876 -
Tsu04g03504 325 SMART zf_4 50 74 IPR001876 -
Tsu04g03504 325 SMART zf_4 173 196 IPR001876 -
Tsu04g03504 325 ProSitePatterns Zinc finger RanBP2-type signature. 292 311 IPR001876 -
Tsu04g03504 325 PANTHER OS04G0110600 PROTEIN 3 136 - -
Tsu04g03504 325 PANTHER ZINC FINGER PROTEIN 169 226 - -
Tsu04g03504 325 SUPERFAMILY Ran binding protein zinc finger-like 5 33 IPR036443 -
Tsu04g03504 325 SUPERFAMILY Ran binding protein zinc finger-like 42 76 IPR036443 -
Tsu04g03504 325 ProSiteProfiles Zinc finger RanBP2 type profile. 48 77 IPR001876 -
Tsu04g03504 325 ProSitePatterns Zinc finger RanBP2-type signature. 9 28 IPR001876 -
Tsu04g03504 325 Gene3D - 3 33 - -
Tsu04g03504 325 Gene3D - 42 77 - -
Tsu04g03504 325 Gene3D - 283 317 - -
Tsu04g03504 325 Gene3D - 165 199 - -
Tsu04g03504 325 ProSitePatterns Zinc finger RanBP2-type signature. 52 71 IPR001876 -
Tsu04g03504 325 ProSiteProfiles Zinc finger RanBP2 type profile. 171 199 IPR001876 -
Tsu04g03504 325 ProSiteProfiles Zinc finger RanBP2 type profile. 5 34 IPR001876 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03504 - - lja:Lj4g3v1037490.1 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03504 04 44245873 44250279 Tsu04g03504 04 44245873 44250279 ECH