Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03500 atggaaaaaaagaTTGGTTATAGTGATGCAAACAGAAAAAACTATGGTATTGCTCTATGTTGGTGGTTGACAGTTTCAGTTGTAGCAATCCTTGTAGTAGCTGCTGGTGTTTTTACTATATTCAACTTTCATCATCACTCTCATTCACCTCAAAACTCTAACATCGTTCCCAAATATGATTCTTCTCTTCAGTTAGCCATCCAATTTTTCGACGTCCAAAAATCTGGTAAGGTAAAGAATAATAGGGTTTGGTGGAGAGGGGATTCAGGACTAAGAGATGGGAGTGAAGAAAATTTGGATTTGTCGAAAGGATTGTATGATGCCGGTGATCTTGTGAAATTTGGGTTTCCAATGGCTTTCACTGCTACTGTATTGTCTTGGGCTATTCTTGAATATGGACATAACATGGATGCAGTTAAGCAGCTAGATTATGTAGTAGACTCACTCAAGTGGATCACTGATTATCTTGTTAATGCACATCCTTTTGCTGAGGTGCTTTATATTCAGGTAGGGGATCCTGAGGTGGACCACAATTGCTGGGAAAGGCCCGAAAACATGACGGAAAAAAGGCCACTCACTCAAGTTAACTCATCTTACCCAGGAACAGAAGTTGCAGCAGAAACAGCAGCGGCGTTAGCCTCAGCATCTCTAGTTTTTAAGGAGATTAATCTCACCTACTCTCAGATTCTCCTTGAACATGCTCAGCAACTGTTTACTTTTGCTGATACATACAAAGTTTCTTACAGTGTTAGTATTCCTCAAGTTGGAAAATACTATAACTCATCTGGTTATGAGGATGAACTTTTATGGGCAAGTAGCTGGCTCTATCATGCAACGAAGGATCCGTCGTATCTAAACTATGTGACAGAGAAGAATGAGAATGAATTTGGTAGTTTAGGAAGTAGTTCTTGGTTTAGTTGGGATGATAAGCATGCTGCAACTCAGGTTCTTTTGTCCAGAGTAAACTTCTTTGGCACTAGAGATGTCCCAGATGCAGAGAACCTTGACCTTCAAAAGTACAGAGAAACTGCTGAAATACTCATGTGCAAGCTTCTACCAGATTCACCAACAGCCACAACCAACAGAACCAAAAGTGGACTGATTTGGGTGGCACCATGGAACTCTTTGCAACATTCAGTTGCTTCAGCATTCTTAGCTGTGCTTTATAGTGATTACATGTCCACATCTCAAACTGAAAATCTATATTGTAGCGGGAAAATGTATAAGCCAATAGATCTCCGTAAATTCGCCATTTCTCAGGTAGAGTATGTGTTGGGAGAAAATCCAATGAGTATGAGTTTTCTTGTGGGACACGGAAGTGAATACCCTAAATATATACATCATAGAGGATCTTCAATTCCAGTTGATGCTAAAACTGGATGCAGGGATGGATTCAAGTGGTATGATTCACCTGACCCCAATCCTAATGTGGCTTTTGGAGCTTTAGTTGGTGGCCCTTTTTTCAATGAGACATATAATGATTTTAGGAACAATTCAATGCAGGCTGAACCAACCACTTATAGTAATGCACTTTTGAGTTTGgtacttctttttctttactttactttgagagagaaagataaGCACGGGCGTTCTGCTACTGTTGTAACATCGTCTTCTCCTTTTCATCATCCTGACagGAAATGGCGGGGGATGAAGATATTAAAATGTCGGGTTTGA 1680 0.3911 MEKKIGYSDANRKNYGIALCWWLTVSVVAILVVAAGVFTIFNFHHHSHSPQNSNIVPKYDSSLQLAIQFFDVQKSGKVKNNRVWWRGDSGLRDGSEENLDLSKGLYDAGDLVKFGFPMAFTATVLSWAILEYGHNMDAVKQLDYVVDSLKWITDYLVNAHPFAEVLYIQVGDPEVDHNCWERPENMTEKRPLTQVNSSYPGTEVAAETAAALASASLVFKEINLTYSQILLEHAQQLFTFADTYKVSYSVSIPQVGKYYNSSGYEDELLWASSWLYHATKDPSYLNYVTEKNENEFGSLGSSSWFSWDDKHAATQVLLSRVNFFGTRDVPDAENLDLQKYRETAEILMCKLLPDSPTATTNRTKSGLIWVAPWNSLQHSVASAFLAVLYSDYMSTSQTENLYCSGKMYKPIDLRKFAISQVEYVLGENPMSMSFLVGHGSEYPKYIHHRGSSIPVDAKTGCRDGFKWYDSPDPNPNVAFGALVGGPFFNETYNDFRNNSMQAEPTTYSNALLSLVLLFLYFTLREKDKHGRSATVVTSSSPFHHPDRKWRGMKILKCRV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03500 559 PANTHER ENDOGLUCANASE 2 20 516 - -
Tsu04g03500 559 PANTHER ENDO-1,4-BETA-GLUCANASE 20 516 - -
Tsu04g03500 559 Gene3D - 57 522 IPR012341 GO:0005975
Tsu04g03500 559 Pfam Glycosyl hydrolase family 9 59 515 IPR001701 GO:0004553|GO:0005975
Tsu04g03500 559 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 423 449 IPR018221 -
Tsu04g03500 559 SUPERFAMILY Six-hairpin glycosidases 59 525 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03500 Tsu-Chr4 44183621 44189268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03500 20 510 Glycoside Hydrolase AT1G75680 61.323 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03500 - K01179 gmx:100782202 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03500 04 44183621 44189268 Tsu04g03500 04 44183621 44189268 ECH