Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03476 ATGCTACCTATATTCTTCCTTCTCCTAACATCACTCATCTCACAATCTATAGCTTGTAATGTTGTTGACAAAGAAGCATTACTTCAATTCAAGAACCAAATAACCTCTGACCCATCAAAATTGTTAAATACATGGACACCTTCCTCAGACTGTTGCAAAGGTTGGAATGGAATCACATGTGATTCCACCACCGGAAGAGTTATTAGTCTAACTCTTTCCGGAACCGTCGACGACGCCGACTTACCTTTAGATACATTTTTATCAGGAACATTATCACCTTATCTTGGAAACTTAACCAATCTCAAAATTTTAAGCCTTGTTAATTTGAAGCAATTGAATGGTCCAATCCCAAAAGAGTTCAATAAACTTTCCAATCTTGAGAAACTTTATCttaatgataataatttttctgGTAGTTTACCTTTTGAGATTGGATCTTTGATCTCTTTATCAGAACTTGTTCTATCAGGAAATAAATTTTCTGGAAGAATTCCATCTTCAATAAGAAACTTGAAGCTTCTAACTAGTCTTGATCTTCACAAAAACGATTTTCGTAGTGGAGTTCCTGAGATCATTGGAGATTTgaaaaatctaagaaatataGATTTGTCTGATAATAAAATCGACGGGATAATTCCGGAATCAATTGGCAATCTTAAACAGTTGGTTACACTTGATATGATGAAAAACAAGATTAAAGGATATGTTCCTGTTTCTATTGGAGGACTTGATTCTTTAACTTTTTGTAGGATATCAGAAAATTTGTTAACTGGGATTTTGCCTTCTGAGATTGGTAATCTCAAGAATTTGAAAAGTTTGAACCTTGGAAACAATATGCTTAATGGGAATTTGCCTGCTTCTATTGGAAATTTGAGTAGTTTGGTTGAATTGTATCTTGCCAATAATCAGTTTTCAGGTAAAATTCCACCTACGTTGGAGAATTTGAAGAATTTGCAAAGAGTTGATTTTTCGAGTAATAGACTCAAAGGGAGAATTCCAAAAAGTATGGCCAAAATGTCAGTATCGTCTTTTTTGGGTAATCGTAATTTGTGTGGGTCACCACTACTTCCATGTAAACGTTTTTAG 1086 0.3343 MLPIFFLLLTSLISQSIACNVVDKEALLQFKNQITSDPSKLLNTWTPSSDCCKGWNGITCDSTTGRVISLTLSGTVDDADLPLDTFLSGTLSPYLGNLTNLKILSLVNLKQLNGPIPKEFNKLSNLEKLYLNDNNFSGSLPFEIGSLISLSELVLSGNKFSGRIPSSIRNLKLLTSLDLHKNDFRSGVPEIIGDLKNLRNIDLSDNKIDGIIPESIGNLKQLVTLDMMKNKIKGYVPVSIGGLDSLTFCRISENLLTGILPSEIGNLKNLKSLNLGNNMLNGNLPASIGNLSSLVELYLANNQFSGKIPPTLENLKNLQRVDFSSNRLKGRIPKSMAKMSVSSFLGNRNLCGSPLLPCKRF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03476 361 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Tsu04g03476 361 Gene3D Ribonuclease Inhibitor 84 360 IPR032675 -
Tsu04g03476 361 SUPERFAMILY L domain-like 45 336 - -
Tsu04g03476 361 SMART LRR_typ_2 195 219 IPR003591 -
Tsu04g03476 361 SMART LRR_typ_2 291 315 IPR003591 -
Tsu04g03476 361 SMART LRR_typ_2 171 194 IPR003591 -
Tsu04g03476 361 SMART LRR_typ_2 267 290 IPR003591 -
Tsu04g03476 361 SMART LRR_typ_2 123 147 IPR003591 -
Tsu04g03476 361 Gene3D Ribonuclease Inhibitor 15 83 IPR032675 -
Tsu04g03476 361 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 5 310 - -
Tsu04g03476 361 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 206 339 - -
Tsu04g03476 361 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 297 359 - -
Tsu04g03476 361 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515
Tsu04g03476 361 Pfam Leucine Rich Repeat 269 291 IPR001611 GO:0005515
Tsu04g03476 361 Pfam Leucine rich repeat 197 256 IPR001611 GO:0005515
Tsu04g03476 361 SMART LRR_sd22_2 98 128 - -
Tsu04g03476 361 SMART LRR_sd22_2 315 336 - -
Tsu04g03476 361 SMART LRR_sd22_2 195 221 - -
Tsu04g03476 361 SMART LRR_sd22_2 267 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03476 Tsu-Chr4 43916489 43917574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03476 84 358 Receptor kinase-like Gene Family AT5G46330 33.434 1.24e-44 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03476 - - mtr:MTR_8g076360 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03476 04 43916489 43917574 Tsu04g03476 04 43916489 43917574 ECH