LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g03453	ATGAAATATTCACGCTTCTTACAATTTTCACTTCTCcgaaaaaccctaattcaaaaccctaatttcccTTCTCCTCAAATTTCAAAACCCTACATCACAACACCAAATCCAAATTCCCAATGCAAATTCACCTCAATACGCAATTTCAACACCGCGTCGCAAGAATCCGAGAAAGTATCCGGGATCGTGGATGAACTCACTGGATTAACGCTTTTGGAAGTTATGGACCTTGTTGAAGTGATGCGAGAGAAAAAAGGAATCAATGAGCTTCCGATTATGATGTTGATGGTTCCGGGAATGGGAATCAGGGGAATGCCGAGGGGTTTGGGTGGAGTGAAAGGGGGTGGTGGAGAAAAAGGAGGGgaagagaagaaggttgagAAAACGGCGTTTGATGTTAAGCTTGATGGTTTTGATGCGGCGGCGAAGATTAAGATTATTAAGGAAGTTAGGACTTTTACTAGTTTGGGTTTGAAGGAAGCTAAGGATTTGGTGGAGAAAGCGCCTACTCTTTTGAAGAAAGGTGTGACGAAGGAAGAAGCCGAGAGTATTATTGCTAAGTTGAAGGAGGTTGGAGCAAAAGCTTCTatggaataa	597	0.3886	MKYSRFLQFSLLRKTLIQNPNFPSPQISKPYITTPNPNSQCKFTSIRNFNTASQESEKVSGIVDELTGLTLLEVMDLVEVMREKKGINELPIMMLMVPGMGIRGMPRGLGGVKGGGGEKGGEEKKVEKTAFDVKLDGFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKAPTLLKKGVTKEEAESIIAKLKEVGAKASME	198

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g03453	198	CDD	Ribosomal_L7_L12	57	197	IPR000206	GO:0003735\|GO:0005840\|GO:0006412
	Tsu04g03453	198	SUPERFAMILY	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	58	132	IPR036235	GO:0003735\|GO:0005840\|GO:0006412
	Tsu04g03453	198	SUPERFAMILY	ClpS-like	127	197	IPR014719	-
	Tsu04g03453	198	Pfam	Ribosomal protein L7/L12 dimerisation domain	58	96	IPR008932	GO:0003735\|GO:0005840\|GO:0006412
	Tsu04g03453	198	Hamap	50S ribosomal protein L7/L12 [rplL].	56	198	IPR000206	GO:0003735\|GO:0005840\|GO:0006412
	Tsu04g03453	198	Pfam	Ribosomal protein L7/L12 C-terminal domain	131	197	IPR013823	GO:0003735\|GO:0006412
	Tsu04g03453	198	Gene3D	-	125	197	IPR014719	-
	Tsu04g03453	198	PANTHER	39S RIBOSOMAL PROTEIN L12	39	198	IPR000206	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g03453	Tsu-Chr4	43713061	43715636	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g03453	K02935		-	gmx:100775592	218.394

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g03453	04	43713061	43715636	Tsu04g03453	04	43713061	43715636	ECH