Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03425 ATGAAGAACTTCACTTTGCTTGCACCTTCGAGTTCAACTTCAACAACACAACAATTCCTCTTTCAAATTCATCACTCTTTCTTTGCCGTTGGATTCGCCACCCGAACCACCTTCATTCCTAACCGAACCACCACCGAATTACCGCCACATCTTTGTTGCCGAACCAAACAATGTCGCTCCAAAGCATTTACAACCAAACAAGAGCTTCTTGCAGCACTTCaggaacaagaagaagaagaagaagatgatgatgacaCATCCTTCTTATCCCTCAGCATGAAGCCGGACCGGAGTTTGGGTTTCCTTGATGATTATGAGACTGAGGAACTCAATTATGATCCTAACCACCGTAGtgGATATGTGGCTTTACTTGGCATGCCAAATGTTGGGAAGAGTACACTGGCAAACCAAATGGTTGGCCAAAGGTTGTCAATAGTTACAGATAAACCTCAAACAACAAGGCATCGTATTCTTTGTATATGTTCTGGCTCCGATTATCAGATGATACTTTATGATACTCCCGGTGTTCTACAAGAGCAAAGGCACAAGTTGGACTCAATGATGATGCAAAATGTTCGCAGTGCTGCAGTTAATGCTGACTGTATATTGATTCTCGTAGATGCATGTAAAGCGCCTGAAAAAATTGACGAAGTGTTAGAAGGCATGGGAGACCACAAAGATAAAGTCCCCACCCTATTGATTATGAACAAGAAAGATCTTATCAAACCTGGTGAAGTTGCAAAGAAACTTGAGTGGTATACAAAATTTACTGATGTTGACGAGGTTATACCAGTTAGTGCCAAGTATGGTCATGGGATTGAAGATGTCAAGAACTGGGTACTATCGAAGCTTCCTAATGGTCCAGCTTATTTTCCAAAGGACATTATCAGTGAGCATCCAGAACGATTTTTTGTAGCTGAAATTATTAGAGAAAAGATTTTTTTGCAGTATCGAAAGGAAATCCCCTATGTGTGTCAGGTGAATGTTTTAAGCTATAAGGCTCGACCAAATGCAAAAGACTTTATACAGGTGCAGATTTTGGTTGAGAAAAACTCGCAGAAAATGGTCGTTATTGGAAAAAACGGAAATGCATTGAAACTGCTTGCAACAGCTGCGCGCCTTGATATTGAAGATTTTCTACAGAAGAAAGTTTATCTCGAGATTCAAGTAAAGGTTAAAGAAAATTGGCGACAAGACGAAGGGTTTCTCAAGCACAGTGGTTATGGAGGTCAAATAGGTGTTATATGA 1248 0.3942 MKNFTLLAPSSSTSTTQQFLFQIHHSFFAVGFATRTTFIPNRTTTELPPHLCCRTKQCRSKAFTTKQELLAALQEQEEEEEDDDDTSFLSLSMKPDRSLGFLDDYETEELNYDPNHRSGYVALLGMPNVGKSTLANQMVGQRLSIVTDKPQTTRHRILCICSGSDYQMILYDTPGVLQEQRHKLDSMMMQNVRSAAVNADCILILVDACKAPEKIDEVLEGMGDHKDKVPTLLIMNKKDLIKPGEVAKKLEWYTKFTDVDEVIPVSAKYGHGIEDVKNWVLSKLPNGPAYFPKDIISEHPERFFVAEIIREKIFLQYRKEIPYVCQVNVLSYKARPNAKDFIQVQILVEKNSQKMVVIGKNGNALKLLATAARLDIEDFLQKKVYLEIQVKVKENWRQDEGFLKHSGYGGQIGVI 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03425 415 PANTHER GTPASE ERA 76 409 IPR005662 GO:0003723|GO:0005525
Tsu04g03425 415 TIGRFAM era: GTP-binding protein Era 119 391 IPR005662 GO:0003723|GO:0005525
Tsu04g03425 415 CDD Era 116 284 IPR030388 GO:0005525
Tsu04g03425 415 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 117 286 IPR030388 GO:0005525
Tsu04g03425 415 Pfam 50S ribosome-binding GTPase 121 237 IPR006073 GO:0005525
Tsu04g03425 415 Coils Coil 59 86 - -
Tsu04g03425 415 Pfam KH domain 320 397 IPR004044 GO:0003723
Tsu04g03425 415 PANTHER GTPASE ERA-LIKE, CHLOROPLASTIC 76 409 - -
Tsu04g03425 415 Gene3D - 113 295 IPR027417 -
Tsu04g03425 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 318 IPR027417 -
Tsu04g03425 415 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 293 408 IPR009019 GO:0003723
Tsu04g03425 415 TIGRFAM small_GTP: small GTP-binding protein domain 121 279 IPR005225 GO:0005525
Tsu04g03425 415 Hamap GTPase Era [era]. 116 408 IPR005662 GO:0003723|GO:0005525
Tsu04g03425 415 Gene3D - 297 412 IPR015946 -
Tsu04g03425 415 ProSiteProfiles Type-2 KH domain profile. 317 394 IPR004044 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03425 K03595 - gmx:100815820 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03425 04 43451850 43457093 Tsu04g03425 04 43451850 43457093 ECH