Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03418 ATGGCTTCTTGTATATCTACTCCTTCATCTTCTTTCAGATTACAACTCACCAGAACAAGCTTCATTGCTGCACCTTCACTCCCTCTCTATCCCCGAAGTAAGTGTGAATTGAACAGGAGGAGTTTAGCATTTAAAGGAATTATGGCAACTGGAGTTTCAGTCATGGCTTCCACTCTTACTTCACAAGCTCAACCATCTCAAGAGAAGGAACTTGAAAGATTAGCATACAAACCGGAAGGGTACAATTATTGGAAGTGGAGGGATCATAAAATTCACTATGTTGTGCAAGGAGAAGGCCCTCCTATTGTCCTTATTCATGGTTTTGGTGCATCTGCTTTCCACTGGAGATACAACATTCCAGAATTGGCTAAGAAACACAAGGTTTATGCCATAGACTTGCTTGGATTTGGGTGGAGTGACAAAGCACTCGTTGATTATGATGCCATGGTGTGGAGGGATCAAGTCGTGGACTTCTTGAAGGAAATTGTAAAAGAACCTGCAGTTTTGGTTGGAAATAGTCTTGGAGGATTTACTGCTTTGATTGCAGCAACTGGGTTGCCTGAGTTTGTCAGTGGGGTTGCTCTGCTGAATTCTGCAGGACAATTTGGTGATGGAAAGGAACGTAAAACTTCCGAGGAAACACCTCTACAAAAGTTTTTCCTAAAACCTTTGAAGGAAGTTTTCCAGCGTGTAGTTCTTGGATTTATATTTTGGCAATCGAAGCAACCCGCTCGGATTGAATCAGTCTTAAAAAGTGTGTATGTAAACTCTTCTAATGTGGACGACTATCTTGTTGAATCTATTACAAGGCCAGCTCAAGACCCCAATGCCGGAGAAGTTTATTACAGGTTAATGACACGCTTCATGATGAATCAAAGCACGTACACTCTAGATTCTGTGTTAAGTGATCTCTCTTGCCCGTTGCTTCTGCTATGGGGTGACCTTGATCCATGGGTTGGTCCAGCCAAAGCTAATAGAATCAAAGAGTTTTATCCAAAATCGACACTTGTTAACTTGCAAGCTGGGCATTGCCCACACGATGAGTTATGGAGCAAGTGCAAGTTGGATTTCAAGTGTAAGTGGTTAAATCCTCCATCTGCTATAAATAGGAAGAACGTAAAGTTCCTCTCATTCATTCTGAGTCACACCTCACATTTCACAACCTCTCCCTCAACTCAACTTCTTAGGTGA 1191 0.4207 MASCISTPSSSFRLQLTRTSFIAAPSLPLYPRSKCELNRRSLAFKGIMATGVSVMASTLTSQAQPSQEKELERLAYKPEGYNYWKWRDHKIHYVVQGEGPPIVLIHGFGASAFHWRYNIPELAKKHKVYAIDLLGFGWSDKALVDYDAMVWRDQVVDFLKEIVKEPAVLVGNSLGGFTALIAATGLPEFVSGVALLNSAGQFGDGKERKTSEETPLQKFFLKPLKEVFQRVVLGFIFWQSKQPARIESVLKSVYVNSSNVDDYLVESITRPAQDPNAGEVYYRLMTRFMMNQSTYTLDSVLSDLSCPLLLLWGDLDPWVGPAKANRIKEFYPKSTLVNLQAGHCPHDELWSKCKLDFKCKWLNPPSAINRKNVKFLSFILSHTSHFTTSPSTQLLR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03418 396 Gene3D alpha/beta hydrolase 78 353 IPR029058 -
Tsu04g03418 396 PANTHER PHEOPHYTINASE, CHLOROPLASTIC-LIKE ISOFORM X1 13 368 - -
Tsu04g03418 396 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 13 368 - -
Tsu04g03418 396 Pfam Alpha/beta hydrolase family 102 348 IPR000073 -
Tsu04g03418 396 PRINTS Alpha/beta hydrolase fold signature 125 140 IPR000073 -
Tsu04g03418 396 PRINTS Alpha/beta hydrolase fold signature 169 182 IPR000073 -
Tsu04g03418 396 PRINTS Alpha/beta hydrolase fold signature 183 196 IPR000073 -
Tsu04g03418 396 SUPERFAMILY alpha/beta-Hydrolases 82 348 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03418 Tsu-Chr4 43399289 43404750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03418 101 348 Acyl Lipid Metabolism Gene Families AT3G10840 25.083 6.58e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03418 - - aprc:113857506 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03418 04 43399289 43404750 Tsu04g03418 04 43399289 43404750 ECH