Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03411 ATGCCTTTGGGAGAAGACTATGAAGATATTAGGAACCTTAGAAAGCCATTagtcaacaacatcaacaacaatagTGCTGGAACTGGCTCTTTTTATATCGTGTTATGTGTTATCATTGTAGCTTTGGGTCCTCTCCAATTTGGTTTCACGTGTGGCTATTCTTCGCCAACGGAAACAGATATGACGCGAGATCTTAATCTCACAATTTCACAGTTTTCATTGTTTGGTTCTTTAGCCAACATTGGTGCAATGGTTGGAGCAATGTCTAGTGGTCAAATAGCAGGATACTTTGGGCGTAAAGGGTCACTAATAGTAGCAGCAATCCCAAATATATTTGGATGGCTTACCATTTCATTGGCCAAAGACTCATCGCTTTTATATATAGGAAGATTGTTGGAAGGTTTTGGAGTGGGAATAATCTCTTATGTGgTACCTATTTATATAGCAGAGATATCACCAAGAACCATGAGGGGTAGTCTAGGATCTGTGAACCAGCTATCAGTTATGACTGGGATCATGTTGGCTTATTTGTTAGGCATGCTTTTCGAATGGAGAATGCTAGCAATGTTAGGAATTTTGCCCTGTGCAATACTAATACCAGGGCTACACTTCATTCCAGAATCACCTAGATGGTTGGCTGAAATGGGAATGATGGAAAGGTTTGAATCTTCATTACAATCTTTAAGAGGAACCAATGTTGATATTAATATAGAAGCACAAGAAATAAAgGCATCATTGGCATCAAATGCACAAACAAATGCTGTACACTTAGCAGATCTCAAGAGGAGAAGATATTGGTTTCCTTTAATGGTAGGTATGGGATTACTTGTGCTGCAACAAGCTTGTGGTATCAATGGAGTATTTTTCTATTCAAGTAAAATCTTTTCAAATGcagGAATTAAATCCAGCAATGCTGCTACATTTGGACTAGGAGCTACAATGgttGTAGTGACTGGGATCACTACTTCGTTGGTAGACAGAAGTGGCCGAAGGGTGCTTCTCATATTATCTTCATCTGTGATGACAATTAGCCTGCTACTTATTGCTACAGCATTTTATCTACAGGGAGTTGTAAGAAAGGGCTCTGACCTTCATCAAATGATGGCAATGATCTCTCTTGTGGGGCTTCTGGCTTTGGTAATTGGTTTTTCTCTTGGGGTTGGTCCAATTCCTTGGCTTATAATGTCTGAGATACTTCCACCAAATATTAAGGGTCTAGCTGGAAGTGCAGCAACATTTCTAAATTGGTTCACTGCCTCTGTTGTCACTTTGACTGCACACTTTCTTCTAAGTTGGAGCAATGCAGGAACATTCAcaatttatgcaattttttctGCCATCAACGTTGCTTTTATTTTACTTTGGGTTCCTGAGACTAAGGACAGAACATTGGAAGAAATTCAGGCATCATTTATTAGATAA 1422 0.3805 MPLGEDYEDIRNLRKPLVNNINNNSAGTGSFYIVLCVIIVALGPLQFGFTCGYSSPTETDMTRDLNLTISQFSLFGSLANIGAMVGAMSSGQIAGYFGRKGSLIVAAIPNIFGWLTISLAKDSSLLYIGRLLEGFGVGIISYVVPIYIAEISPRTMRGSLGSVNQLSVMTGIMLAYLLGMLFEWRMLAMLGILPCAILIPGLHFIPESPRWLAEMGMMERFESSLQSLRGTNVDINIEAQEIKASLASNAQTNAVHLADLKRRRYWFPLMVGMGLLVLQQACGINGVFFYSSKIFSNAGIKSSNAATFGLGATMVVVTGITTSLVDRSGRRVLLILSSSVMTISLLLIATAFYLQGVVRKGSDLHQMMAMISLVGLLALVIGFSLGVGPIPWLIMSEILPPNIKGLAGSAATFLNWFTASVVTLTAHFLLSWSNAGTFTIYAIFSAINVAFILLWVPETKDRTLEEIQASFIR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03411 473 PANTHER - 16 471 - -
Tsu04g03411 473 CDD MFS_GLUT6_8_Class3_like 34 466 IPR044775 GO:0008643|GO:0051119
Tsu04g03411 473 ProSiteProfiles Major facilitator superfamily (MFS) profile. 36 460 IPR020846 GO:0022857
Tsu04g03411 473 PANTHER SUGAR PORTER (SP) FAMILY MFS TRANSPORTER 16 471 - -
Tsu04g03411 473 SUPERFAMILY MFS general substrate transporter 30 468 IPR036259 -
Tsu04g03411 473 TIGRFAM SP: MFS transporter, sugar porter (SP) family 25 467 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03411 473 Pfam Sugar (and other) transporter 37 471 IPR005828 GO:0016021|GO:0022857|GO:0055085
Tsu04g03411 473 ProSitePatterns Sugar transport proteins signature 2. 132 157 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tsu04g03411 473 Gene3D MFS general substrate transporter like domains 28 473 IPR036259 -
Tsu04g03411 473 PRINTS Sugar transporter signature 127 146 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03411 473 PRINTS Sugar transporter signature 373 394 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03411 473 PRINTS Sugar transporter signature 396 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03411 473 PRINTS Sugar transporter signature 279 289 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03411 473 PRINTS Sugar transporter signature 44 54 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03411 Tsu-Chr4 43325327 43330784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03411 1 471 Organic Solute Cotransporters AT1G75220 61.934 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03411 K03444 - gmx:100801076 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03411 04 43325327 43330784 Tsu04g03411 04 43325327 43330784 ECH