Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03389 ATGGTGCACAGTGCCTACGATTCCTTCGAGCTTCTCACCAATTCTCCATCCAAAATCGAATCAATCGAATCCTACGCTTCCAAAATCCTCTTAGGATGCACCGACGGATCTCTCCTCGTTTACGCGCCGGCATCGGAGCGATCAGCGACGGTGCCGGAGGAAATGCGGAATGAAACATATACATTAGAGAAAAACATAAAAGGATTTGCGAGAAAACCTGTTGTTTCAATGCAGGTGGTGGAATCGAGAGAGTTTCTTCTATCGCTTTCTGAATCAATCGCGTTTCATAAGCTTTCTACGTTTGAAACTATTGCTGTTATTACTAAGGCGAAAGGTGCTCATGCTTTTTGCTGGGATGAAAAGAGAGGTTTATTGTGTTTTGCTAGACAGAAGCGAGTGTGTATCTTTAGACACGACGGTGGTAGAGGATTTGTGGAGATGAAAGACTTTGGTGTTCCTGATGTGGTGAAGTCAATGAGTTGGTGTGGTGTGAATATATGTCTCGGGATTAGAAAAGAGTATGTGATTCTGAATGCTACAAGTGGTACAATATCTGAAGTTTTTACTTCTGGGAGGGTAGCACCACCTTTGGTGGTACCACTTCCTTCTGGAGAGCTCCTTCTGGGCAAGGAGAACATTGGTGTCATTGTGGACCAAAATGGAAAACTTCGTCCAGATGGTAGGATTTGTTGGTCAGAGGCCCCAACAGAAGTTGTGATTCAGAAGCCATATGCTTTAGCCCTGCTGCCAAGATTTGTGGAGATTCGATCTCTCCGAAGTCCATATCCATTGATACAAACAATAGTTTTTCGAAACGCTCGCCATCTTCGCCAGAGCAATAATTCAGTGATTATTGCTTTAGAAAATTCTGTTCATGGCTTCTTTCCTGTTCCTCTTGGAGCCCAGATTGTCCAATTAACAGCCGCTGGTAACTTTGAAGAAGCTTTGTCATTGTGCAAGCTCCTTCCACCTGAAGATTCAAATCTTCGTGCTGCAAAGGAGGGTTCAATTCATATAAGGTATGCCCACTATCTTTTTGACAACGACAGCTATGAGGAGTCAATGGAACATTTCATAGCATCTCAAGTAGATATAACTCATGTGCTTTCTCTGTACACATCCATTATCCTTCCGAAGACAACTATTGTTCATGATCCAGATAAATTGGACATTTTTGGGGATGCTATGGATCCAGATAAATTGGACATTTTTGGGGATGCTATGGATCTCTCCAGAGGTTCTTCGGCTATGTCTGATGATGATATGGAACCCTCTCCAGAATTGGATGACAATGCAGAACTTGAATCGAAAAAAATGAACCATAATATGCTTATGGCTCTCATAAAATATTTGCAGAAGAAGAGACCTAGTATTATTGAGAAGGCCACTGCAGAAGTAACTGAGGAAGTTGTTTTTGATGCAGTTGGCAATAACTTCGCATCCAATAACAGTAATAggtttaagaaaataaacaagGGGCGTGGTAGTGCACCTGTTAGTTCGGGAGCTCGGGAGATGGCTTCAGTATTAGATACTGCTCTACTCCAAGCATTGCTTCTAACTGGACAACCTTCTATGGCTGAAAATTTGTTGAGAGGTCTTAACTACTGTGATTTGAAAATATGTGAAGAGATACTTCAAGAAGGCAGTTATCATGTTGCTTTAGTAGAACTTTACAAGTGCAACTCCATGCACCGGGAAGCCCTTGAACTTATTAATAAATTGGTGAAAGAATCAAAGTCTAGCCAATCTAAGATTGCAGATAGATTCAATCCGGAGGCCATCATCGAGTACCTCAAGCCACTTTGTGAAACAGACCCAACACTTGCTCTAGAATACTCCATCCTTGTTCTTGAAAGCTGCCCAACCCAAACTATTCAGCTCTTTTTGTCTGGAAATATTCCAGCAGATATGGTTAACTTATATTTGAAGCAACATGCTCCAAACTTGCAAGCCACATACTTGGAGCTCGTGCTTTCAATGAATGAGGACGCTGTATCTGGAACTTTGCAAAATGAAATGGTACATATCTATCTTTCTGAAGTACTTGATTGGCATGCTGATTTAAGTTCTCAACAGCAATGGGACGAAAAAGTTTATTccccaaaaaggaaaaaattattgTCTGCCTTGGAGAGTATATCAGGATATAATCCAGAAACTCTGCTTAAACTTCTTCCGTCAGATGCTTTATACGAAGAGCGGGCAATATTGTTGGGAAAAATGAACCAGCATGAACTAGCATTGTCGTTGTATGTTCATAAGCTTCATGTTCCAGAACTGGCATTGTCATATTGTGATCATGTGTATGAATCTACCCATAAGCCTTCTGTAAAATCTCCCAGCAACATATACTTAATGCTTCTGCAAATCTATTTGAATCCACGGAGGACGACCGTGaactatgaaaagaaaatttcaaatatattatcCCCCCAGAGTAAATCCCTTCGAAGGGTTACTTCAAGATCATTATCAAGAACTAAAAGTCGGGGATCAAAGAAAATTGCTGCAATAGAGATTGCAGAGGACACAAAAACTAGTCTGAGTAGCGACAGTAGGAGTGATGCTGACATGGATGAGTTTATTGAGGAAGGAAGTACTTCTATCATGCTTGATGAGGCCCTCAATTTGTTAAGCCGCAGGTGGGATAGAATCAATGGAGCCCAGGCCCTTAAACTCCTACCAAAAGAGACCAAATTGCAGAACTTGCTTCCATTTCTTGGACCCCTTGTGAGAAAATCTAGTGAAATGTACCGTAATTGCGCAGTTGTCAGGAACTTGAGACTGAGTGAGAACCTTCAGGTGAAAGATGAACTCTACAATAAGAGAAAAGCAGTTATAAAGATTAGTGGTGATAACATGTGCTCCTTGTGCAATAAGAAAATAGGGACTAGTGTTTTTGCAGTTTATCCGAATGGGAAAACTCTAGTGCATTTTGTCTGTTTCAGAGATTCTCAAAGTATGAAAGCTGTAGCCAAAGGGTCTCCACTCAAAAAGgcattttga 3009 0.4035 MVHSAYDSFELLTNSPSKIESIESYASKILLGCTDGSLLVYAPASERSATVPEEMRNETYTLEKNIKGFARKPVVSMQVVESREFLLSLSESIAFHKLSTFETIAVITKAKGAHAFCWDEKRGLLCFARQKRVCIFRHDGGRGFVEMKDFGVPDVVKSMSWCGVNICLGIRKEYVILNATSGTISEVFTSGRVAPPLVVPLPSGELLLGKENIGVIVDQNGKLRPDGRICWSEAPTEVVIQKPYALALLPRFVEIRSLRSPYPLIQTIVFRNARHLRQSNNSVIIALENSVHGFFPVPLGAQIVQLTAAGNFEEALSLCKLLPPEDSNLRAAKEGSIHIRYAHYLFDNDSYEESMEHFIASQVDITHVLSLYTSIILPKTTIVHDPDKLDIFGDAMDPDKLDIFGDAMDLSRGSSAMSDDDMEPSPELDDNAELESKKMNHNMLMALIKYLQKKRPSIIEKATAEVTEEVVFDAVGNNFASNNSNRFKKINKGRGSAPVSSGAREMASVLDTALLQALLLTGQPSMAENLLRGLNYCDLKICEEILQEGSYHVALVELYKCNSMHREALELINKLVKESKSSQSKIADRFNPEAIIEYLKPLCETDPTLALEYSILVLESCPTQTIQLFLSGNIPADMVNLYLKQHAPNLQATYLELVLSMNEDAVSGTLQNEMVHIYLSEVLDWHADLSSQQQWDEKVYSPKRKKLLSALESISGYNPETLLKLLPSDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDHVYESTHKPSVKSPSNIYLMLLQIYLNPRRTTVNYEKKISNILSPQSKSLRRVTSRSLSRTKSRGSKKIAAIEIAEDTKTSLSSDSRSDADMDEFIEEGSTSIMLDEALNLLSRRWDRINGAQALKLLPKETKLQNLLPFLGPLVRKSSEMYRNCAVVRNLRLSENLQVKDELYNKRKAVIKISGDNMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVAKGSPLKKAF 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03389 1002 Pfam Vacuolar sorting protein 39 domain 2 876 984 IPR019453 -
Tsu04g03389 1002 Pfam CNH domain 27 276 IPR001180 -
Tsu04g03389 1002 ProSiteProfiles Citron homology (CNH) domain profile. 16 283 IPR001180 -
Tsu04g03389 1002 Pfam Region in Clathrin and VPS 638 769 IPR000547 GO:0006886|GO:0016192
Tsu04g03389 1002 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 613 800 IPR000547 GO:0006886|GO:0016192
Tsu04g03389 1002 PANTHER VACUOLAR SORTING PROTEIN 39 1 1000 - -
Tsu04g03389 1002 PANTHER CNH DOMAIN CONTAINING 1 1000 IPR032914 GO:0016192
Tsu04g03389 1002 Pfam Vacuolar sorting protein 39 domain 1 510 618 IPR019452 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03389 Tsu-Chr4 43051877 43061790 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03389 K20183 - gmx:100805342 1470.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03389 04 43051877 43061790 Tsu04g03389 04 43051877 43061790 ECH