Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03388 ATGTTCCTTCTTAGAAGGCAAAGCCAGAATCAGCCCGAGAACGGTTCCTCGGGCAATGATGCTAAGTTGGCTGAACTAAAAGCTGCTATTGGGCCCTTATCTGGGCGTCGATTGAAGTATTGCACTGATGCATGTTTAAAGAGATATTTAGAAGCACGGAACTGGAATGTTGATAAAGCCAAGAAAATGCTGGAGGAATCATTCAAGTGGAGGTCTGCTTATAAGCCTGAGGAAATCCGATGGGCTGAAGTAGCACATGAGGGAGAGACAGGAAAAGTCTCCAGAGCTAACTTTCATGATAGACTTGGGAGAACCGTGCTTATTATGAGACCAGGGATGCAGAACACTGCATCAGAAGAAAATAATATCAAGCATTTAGTCTATCTGTTGGAAAATGCCGTACTTAATCTTTCCGAAGGTCAAGAACAAATGTCATGGTTGATAGACTTCACAGGATTTTCATTTGGCACAAAGCTTTCTATTAAAACTGCTCGTGATATTATTCACATCTTACAAAACCACTATCCGGAAAGGCTTGGTATAGCTTTTCTGTACAACCCACCGAGAATATTTCAGGCTTTCTTTAAGGCTGTAAAATACTTTTTGGATCCCAAAACAGCCCAAAAGGTAAAGTTTGTTTATCCCAACAATAAGGACAGTTTGGAGCTGATGAAATCACTCTTTGACATGGATAACCTTCCTAGTGAATTTGGTGGGAAAGCTACTTTGAAGTATGACCATGAAGAGTTCTCGCGGTTAATGACTGAGGACGATGTGAAAACTGCCAAGTACTGGGGACTTGATGATGATAAGCCCTTCACCACTAAGAATGGCCATTCTGGTGCAGAGGTAGCACCAGAACCTGTGGCCAGTATAGTTAGTTGA 885 0.4203 MFLLRRQSQNQPENGSSGNDAKLAELKAAIGPLSGRRLKYCTDACLKRYLEARNWNVDKAKKMLEESFKWRSAYKPEEIRWAEVAHEGETGKVSRANFHDRLGRTVLIMRPGMQNTASEENNIKHLVYLLENAVLNLSEGQEQMSWLIDFTGFSFGTKLSIKTARDIIHILQNHYPERLGIAFLYNPPRIFQAFFKAVKYFLDPKTAQKVKFVYPNNKDSLELMKSLFDMDNLPSEFGGKATLKYDHEEFSRLMTEDDVKTAKYWGLDDDKPFTTKNGHSGAEVAPEPVASIVS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03388 294 CDD SEC14 99 240 IPR001251 -
Tsu04g03388 294 Pfam CRAL/TRIO domain 98 239 IPR001251 -
Tsu04g03388 294 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g03388 294 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 6 290 - -
Tsu04g03388 294 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Tsu04g03388 294 PRINTS Cellular retinaldehyde-binding protein signature 45 67 - -
Tsu04g03388 294 PRINTS Cellular retinaldehyde-binding protein signature 231 240 - -
Tsu04g03388 294 PRINTS Cellular retinaldehyde-binding protein signature 162 183 - -
Tsu04g03388 294 MobiDBLite consensus disorder prediction 1 18 - -
Tsu04g03388 294 SUPERFAMILY CRAL/TRIO N-terminal domain 19 82 IPR036273 -
Tsu04g03388 294 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Tsu04g03388 294 Pfam CRAL/TRIO, N-terminal domain 42 66 IPR011074 -
Tsu04g03388 294 SUPERFAMILY CRAL/TRIO domain 82 260 IPR036865 -
Tsu04g03388 294 Gene3D - 4 272 IPR036865 -
Tsu04g03388 294 PANTHER GH16843P 6 290 - -
Tsu04g03388 294 SMART sec14_4 87 242 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03388 Tsu-Chr4 43040180 43043879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03388 46 234 Acyl Lipid Metabolism Gene Families AT5G47730 26.961 7.73e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03388 - - gmx:100800024 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03388 04 43040180 43043879 Tsu04g03388 04 43040180 43043879 ECH