Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03379 ATGGCAGACCTCAACAACGATCCTCTCATGCGTAACCAAAACGCCGCCGTTCAAGCTCGTACCAAAGCTCAGAACCGCGCCAACGTTCTTCAACTCAAGCTGATTGGACAGAGTCATCCAACCGGTTTAACCTCGAATTTGTTGAAACTGTTTGAGCCTCGGCCTCCTTTAGAGTATAAACCTCCTCCGGAGAAAAGGAAATGTCCTCCGTTAACAGggATGGCGCAATTTGTGAGCAAATTTGCTGAGCCTGGTGAACCGGAATATTCTCCGCCTGTACCAGTAGTTGAAACTCCTGCTGAAAGAAGGGCTAGAGTACACAAGTTAAGACTAGAGAAGGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACATACCGATCCAAATATATCAGGAGATCCATACAAGACTTTATTTGTGGCCAGACTCAGTTATGAGACTACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATACGGTGCAATCAAACGGGTTCGGCTGGTTACTGATACCGAGTCAAATAAGCCCAGGGGTTATGCATTCATTGAATATCTGCACACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGAGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGCGACCCCGCCGTCTAGGCGGCGGGCTTGGTACTACTAGAGTGGGGGGAGAAGAAGTTAATCAGCGACATTCGGGAagGGAGCAACAGCAGTCAGGACCTTCTCGTTCCGAAGAACCAAGAGTGCGGGAGGATCGGCATGCTGATCGGGACAGAGAAAAGTCACGTGAAAGAGGTAAGGAAAGAGATAGAGAACGGGAGCGATCACGGGAACGATCTAGCGATAAGCCTAGGGATCGTGATCATAGAGAGGATAGACACCACAGAGATCGGGACCGGGATAGGAATAGGGACAGGGACAGAGGTAAGGAGAGGGAAAGAGACAGAGATCGCGGACGTGATCGAGAGAGAGGACGCGATCGTGATCGTGGTCGGGAACGTGATCGTGATAGAGAGAGGGATCATGATCGGGACGTAGAACATGATCGTTATCGCGAAAAGGATAAGGATTATGAAGTTGGGGATACTGATCGGGGACGATCCCATGATAGGGGGGCTGATTATGATCATGTTGAATCTAAACATGAGAAGGAACCACATGGTGAAAAAGAACGGGACTATGAACCTGAGGATCATCGTGGGCGGTACAACCAATCTGGGCATGGAAAAAGGCATGCAGATACTGAACATGATCCTGATCACTATGACCATTATGAGCATCAGAGAGGACGGGGGCAGTATGATGAAGGAGATGATCATGGTGATTATAATCAATACCCTGACCATGGTAAGATGGAAGATGACCATCACACTGAAAGACCAAAATCGAAATCACGTGATAGGGACAGAAACCGTGACAAGGACCATGATTATCATCGCTCAGAGAGGTCCCATTCTCGAGAATATGATTACTAG 1521 0.4773 MADLNNDPLMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHTDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDTESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSGPSRSEEPRVREDRHADRDREKSRERGKERDRERERSRERSSDKPRDRDHREDRHHRDRDRDRNRDRDRGKERERDRDRGRDRERGRDRDRGRERDRDRERDHDRDVEHDRYREKDKDYEVGDTDRGRSHDRGADYDHVESKHEKEPHGEKERDYEPEDHRGRYNQSGHGKRHADTEHDPDHYDHYEHQRGRGQYDEGDDHGDYNQYPDHGKMEDDHHTERPKSKSRDRDRNRDKDHDYHRSERSHSREYDY 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03379 506 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 8 365 - -
Tsu04g03379 506 PANTHER - 8 365 - -
Tsu04g03379 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
Tsu04g03379 506 Gene3D - 126 251 IPR012677 -
Tsu04g03379 506 SUPERFAMILY RNA-binding domain, RBD 127 239 IPR035979 GO:0003676
Tsu04g03379 506 CDD RRM_snRNP70 138 228 IPR034143 GO:0030619
Tsu04g03379 506 MobiDBLite consensus disorder prediction 259 506 - -
Tsu04g03379 506 MobiDBLite consensus disorder prediction 221 506 - -
Tsu04g03379 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Tsu04g03379 506 SMART rrm1_1 140 213 IPR000504 GO:0003723
Tsu04g03379 506 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 42 130 IPR022023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03379 Tsu-Chr4 42955306 42961443 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03379 K11093 - mnt:21409464 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03379 04 42955306 42961443 Tsu04g03379 04 42955306 42961443 ECH