Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03357 ATGGCTAGCATTCTAAAACCATCCAAGTGGTTCTCTAGCAACAAAGGTCTTAAGCTTAGATCAAGATCTTccaattcatcatcattatgCTCTCCAAAATCTCCAATGAATAATAACAAGAATGGAGATGATAAAGGATTAAAAGAGGTTTTCAAATACTTTGATGGTGATGGAGATGGAAAAATTTCACCCTATGAATTAAGGTCATATTTTGGGTCAATTGGTGAGCACATGTCTCACGAGGAAGCCGAAAGGGTGATTCGGTATATCGATACCGATGCCGATGACTTGTTAgattttaatgattttattaaGTTGATGAAAGGTGAAGAAGGAAGAGAAAATGATAAAGATTTAAGAAAAGCTTTTGAGATGTTTATTTGGGAGGAGAAAGAAGATTGTATTACTCCAAAAGGGTTGCAAAGGATGTTGCAACGTCTTGGAGATGATAGGTCTTATGAAGAGTGTGTTGTTATGATTGATGCATTTGATATAGATCATAATGGGGTTCTTGATTTCAATGAGTTTCATCAAATGatggtttaa 546 0.3315 MASILKPSKWFSSNKGLKLRSRSSNSSSLCSPKSPMNNNKNGDDKGLKEVFKYFDGDGDGKISPYELRSYFGSIGEHMSHEEAERVIRYIDTDADDLLDFNDFIKLMKGEEGRENDKDLRKAFEMFIWEEKEDCITPKGLQRMLQRLGDDRSYEECVVMIDAFDIDHNGVLDFNEFHQMMV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03357 181 Pfam EF-hand domain pair 133 181 IPR002048 GO:0005509
Tsu04g03357 181 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Tsu04g03357 181 Gene3D - 12 112 - -
Tsu04g03357 181 SUPERFAMILY EF-hand 37 180 IPR011992 -
Tsu04g03357 181 ProSitePatterns EF-hand calcium-binding domain. 91 103 IPR018247 -
Tsu04g03357 181 MobiDBLite consensus disorder prediction 15 41 - -
Tsu04g03357 181 ProSiteProfiles EF-hand calcium-binding domain profile. 151 181 IPR002048 GO:0005509
Tsu04g03357 181 MobiDBLite consensus disorder prediction 15 44 - -
Tsu04g03357 181 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Tsu04g03357 181 PANTHER CALCIUM BINDING PROTEIN 16 180 - -
Tsu04g03357 181 SMART efh_1 82 110 IPR002048 GO:0005509
Tsu04g03357 181 SMART efh_1 155 181 IPR002048 GO:0005509
Tsu04g03357 181 SMART efh_1 46 74 IPR002048 GO:0005509
Tsu04g03357 181 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Tsu04g03357 181 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 16 180 - -
Tsu04g03357 181 CDD EFh 47 108 IPR002048 GO:0005509
Tsu04g03357 181 Pfam EF-hand domain pair 46 108 IPR002048 GO:0005509
Tsu04g03357 181 Gene3D - 113 181 - -
Tsu04g03357 181 ProSitePatterns EF-hand calcium-binding domain. 164 176 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03357 Tsu-Chr4 42723989 42724871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03357 6 181 EF-hand Containing Proteins AT3G50770 50.754 3.11e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03357 K13448 - gmx:100500092 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03357 04 42723989 42724871 Tsu04g03357 04 42723989 42724871 ECH