Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03162 atggacTTAAGCTCTTTAATCATCTTCCTCCTGCTACATTTTCTTCTCCTTGTTACTTTGATTTTTCCTATTGATTCTTTAGAAATTAACAACAACCATTTAGTCAATTTAACTTTTCGATCAGAAGAAGAATTTCATAAGCTGAAGAAGGAGATAACTACCCGTCTTCAACAAATCAACAAGCCTCCTGTTAAGACAATTCAgAGTCCTGATGGTGATATCATAGATTGTGTTTTGACTCATAAACAACTTGCTTTTGATCATCCATTATTGAAAGGACAAAAACCATTggaTCCTCCAAAAAGATCAAGAGGGCATAACCAAATGGATAATTTGTCTAACAACTTTCAATTGTGGAGCTTATCGGGGGAATCTTGTCCTGATGGAACAATTCCAGTTAGAAGAGTAACAGAACAAGATTTATTAAGAACTGACTCTGTTAATggatttggaagaaaaatagtCAATAAATATAAACACCAACATGCAGTTGTAGTAGTGGATGAGGGAGAGTTCTATGGAGCAAAGGCTACTATAAACTTGTGGGCCCCACATATAGAAAGTCCAAATGAATTCAGTTTGGCTCAAATATGGATTGTCTCTGGTACATATGGAAAAGATGTGAACACCATTGAAGCTGGATggcagatCTACCCGAAGGTCTACGGTGACTACAGGactagattttttatttactgGACAGCTGATGCATATCAACATACTGGTTGCTACAATGTAAGATGTCCAGGCTTTgttcaaattaacaaaaattttgTAATTGGAGGTACACTTTCTCCAAATTCTATATATAATGGAGCGCAAGTCAATGTTAACATATCAATAGTGAAGAGTCAACAAACTGGAAATTGGTGGCTTGAACTTGGAAGTGGAAATTATCTTGGATACTGGCCATCATCTATATTCACACACTTGAAGGATTCTGCAACCGAGGTTCATTGGGGTGGAGAAATAGTGAATTCGAAGTACCCTAAGGCTACTTCCACTCAAATGGGTAGTGGACACTTTCCAGATGAAGTGTATGCTATTGAATCACCAAAGTATATAGTGATACAAACAGAATTAGATTTTGAGATCAGACTCTACAATGAATCATCATGGATCTCTGCTCCATCTTGTGGAACTAATTCCTTCGAGCAATCCACCAAAACAGGATTTCACagGTTGTACCAATATATTCATGGTGCAAATTTAAATTCTTCCAAACTAGCAATTACTGCTCCAATCTTAACAAGGATACCTTCATCAGTATCTTCAGAGGTTGGCTATAGTGTAAGAATGTATGTATCACCTCACTTTCAAGGGAAACCTCCACAGTCAAATCCTGAGCTTAAGTTGCAACTTGATAAATGGAAAACTCAATGCATAGCAGTTAGGAAATTCAATGGATATGCAAAGGATGATAACATTAATAAAGAAATTGAAGCACTTGTTACTAGTCTAAACAAACACTTAGATGGAACTTCAACAATGATGCAAGATACAAGCTCATATACCATTGCACAATACAATGCTTCTTTTCATAACACTGAACGGGTAAATGAAGTGTGGATAAATGTGTCAGGATTCAGAACTGATTGCTGA 1602 0.3496 MDLSSLIIFLLLHFLLLVTLIFPIDSLEINNNHLVNLTFRSEEEFHKLKKEITTRLQQINKPPVKTIQSPDGDIIDCVLTHKQLAFDHPLLKGQKPLDPPKRSRGHNQMDNLSNNFQLWSLSGESCPDGTIPVRRVTEQDLLRTDSVNGFGRKIVNKYKHQHAVVVVDEGEFYGAKATINLWAPHIESPNEFSLAQIWIVSGTYGKDVNTIEAGWQIYPKVYGDYRTRFFIYWTADAYQHTGCYNVRCPGFVQINKNFVIGGTLSPNSIYNGAQVNVNISIVKSQQTGNWWLELGSGNYLGYWPSSIFTHLKDSATEVHWGGEIVNSKYPKATSTQMGSGHFPDEVYAIESPKYIVIQTELDFEIRLYNESSWISAPSCGTNSFEQSTKTGFHRLYQYIHGANLNSSKLAITAPILTRIPSSVSSEVGYSVRMYVSPHFQGKPPQSNPELKLQLDKWKTQCIAVRKFNGYAKDDNINKEIEALVTSLNKHLDGTSTMMQDTSSYTIAQYNASFHNTERVNEVWINVSGFRTDC 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03162 533 PANTHER BNAA10G05670D PROTEIN 5 348 - -
Tsu04g03162 533 Pfam SOUL heme-binding protein 349 524 IPR006917 -
Tsu04g03162 533 SUPERFAMILY Probable bacterial effector-binding domain 346 526 IPR011256 -
Tsu04g03162 533 Gene3D - 183 345 - -
Tsu04g03162 533 Gene3D Regulatory factor, effector binding domain 348 530 IPR011256 -
Tsu04g03162 533 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 5 348 - -
Tsu04g03162 533 Pfam Neprosin activation peptide 66 161 IPR025521 -
Tsu04g03162 533 Pfam Neprosin 190 348 IPR004314 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03162 Tsu-Chr4 39585354 39596583 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03162 - - gmx:100776135 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03162 04 39585354 39596583 Tsu04g03162 04 39585354 39596583 ECH