Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03150 ATGGTAATAGTTGCATTATCTTCTTCCCTTCCAGGGAGGTCCAACCTCTTCTCTTCCTTACCTCCACCCAACAACAACCccacctcctcctcctccacccCTCGTCCCCCTATCCCCATTCCCAAATACCCTCCTCCTAAAAAATcccaaccaccaccaccaccaaaccCAGCTCTCAAACACCACAACAAATCCAAATACTACAAACCCATCACAAACCCCACAGTCATCACCTCCGAAGGCGACCGTTCCGTAATAATCGGAGAATCAGGCGTTTCCTATCTTCTCCCTGGCGCACCATTTGAATTTCAGTTTAGTTACTCCGAGACACCGAAAGTGAAACCGTTGGGGATTCGTGAACCGGCTTTTTTACCGTTTGAACCGCCAACGATGCCGAGGCCGTGGACTGGTAAAGCTCCGTTGAAGAAATCGAAGAAGAATATTCCGCTTTTTGATTCTTTTAATCCTCCGCCTCCTGGTATGAAAGGTGTTAAGAAAGTTGAAATGCCGGGTCCTTTTCCTCTTGGGAAGTTTCCAGAAGAAGGAATGAGTAGAGAGGAGATACTTGGTGAACCTCTTAAGAAATGGGAGGTGAAAATGCTTGTTAAGCCTATGATGTCTGATAATCGCCAGGTTAATCTTGGAAGGGATGGATTAACTCATAACATGTTGGAGTTGATACATTCACATTGGAAGCGTCGCCGTGTTTGTAAAATTCGTTGTAAAGGTGTTCCCACTGTTGATATGGATAATGTTTGCCGCCATATTGAGGAGAAAGCAGGGGGGAAAATAATACATCGAGTTGGCGGTGTAGTTTATCTTTTCCGCGGCAGAAATTACAACTACCGTACTCGTCCACAGTATCCGGTGATGCTCTGGAAGCCAGCTGCTCCTGTTTATCCAAAACTTATACGAGATGCTCCAGAAGGATTAATGAAAGCTGAAGCAGATGAGTTACGGATGAAAGGGAAAAGCCTGTTGCCCATATGTAAATTAGCCAAAAATGGAGTATACACAACACTTGTACAGGATGTCAGAGATGCTTTTGAAGGGAGCCATTTGGTGAAGATTGACTGCAAGGGATTGGACCCTAGTGATTACAAGAAATTAGGTGCCAAGCTTAAGGATTTGGTTCCTTGTGTGCTATTGTCTTTCGACGATGAACAAGTATTGATTTGGAGGGGCAAAGACTGGAAATCAATGTACCCACCAGCTCCGGTTTTTCCTCCTGCTGCAGTTGGCATTACACGGAATTTGGACAATACAGGCAAGGTTGATGATAATCAATCAAAGGATATTGGGAACATGATCAAAACAAGCTCAAAAATGTTATCTCTGTGGAAGAGTGCAATTGAGGCAAACAAGGCTTTGTTGCTAGAAGAATTTAATCTTGGTCCTGATGCTCTCTTGGAGAAGGTAGAAGAATTTGAGGGTATTTCACATGCCACAGAACACTCCTATCCAGCCTTTACTTCTTCAAGTGATAATGCTTTTGAAGATGGTAGTGAAGAAAACTATTCAAGTGACGGCGGCCTAGAGGATGTTGATGATTATGACAGcaacaatgatgatgaagacgacgatgatgatgatgattacttgaatgaagatgaaGACGACGAGTTTAATGATACAGTGGATACATCTGCTCAACCCGGATCGCTACCAATTGATTTGCTTGTTAATAAGCTCAAATTTAGACAATAG 1707 0.4077 MVIVALSSSLPGRSNLFSSLPPPNNNPTSSSSTPRPPIPIPKYPPPKKSQPPPPPNPALKHHNKSKYYKPITNPTVITSEGDRSVIIGESGVSYLLPGAPFEFQFSYSETPKVKPLGIREPAFLPFEPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPPGMKGVKKVEMPGPFPLGKFPEEGMSREEILGEPLKKWEVKMLVKPMMSDNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCKGVPTVDMDNVCRHIEEKAGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIRDAPEGLMKAEADELRMKGKSLLPICKLAKNGVYTTLVQDVRDAFEGSHLVKIDCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQVLIWRGKDWKSMYPPAPVFPPAAVGITRNLDNTGKVDDNQSKDIGNMIKTSSKMLSLWKSAIEANKALLLEEFNLGPDALLEKVEEFEGISHATEHSYPAFTSSSDNAFEDGSEENYSSDGGLEDVDDYDSNNDDEDDDDDDDYLNEDEDDEFNDTVDTSAQPGSLPIDLLVNKLKFRQ 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03150 568 Pfam CRS1 / YhbY (CRM) domain 195 276 IPR001890 GO:0003723
Tsu04g03150 568 Pfam CRS1 / YhbY (CRM) domain 313 394 IPR001890 GO:0003723
Tsu04g03150 568 ProSiteProfiles CRM domain profile. 309 405 IPR001890 GO:0003723
Tsu04g03150 568 ProSiteProfiles CRM domain profile. 191 287 IPR001890 GO:0003723
Tsu04g03150 568 Gene3D - 192 288 IPR035920 -
Tsu04g03150 568 MobiDBLite consensus disorder prediction 486 554 - -
Tsu04g03150 568 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 10 565 - -
Tsu04g03150 568 MobiDBLite consensus disorder prediction 506 545 - -
Tsu04g03150 568 SUPERFAMILY YhbY-like 312 402 IPR035920 -
Tsu04g03150 568 SMART CRS1_YhbY_2 193 276 IPR001890 GO:0003723
Tsu04g03150 568 SMART CRS1_YhbY_2 311 394 IPR001890 GO:0003723
Tsu04g03150 568 MobiDBLite consensus disorder prediction 486 503 - -
Tsu04g03150 568 MobiDBLite consensus disorder prediction 1 63 - -
Tsu04g03150 568 MobiDBLite consensus disorder prediction 8 26 - -
Tsu04g03150 568 MobiDBLite consensus disorder prediction 27 59 - -
Tsu04g03150 568 Gene3D - 311 404 IPR035920 -
Tsu04g03150 568 SUPERFAMILY YhbY-like 192 286 IPR035920 -
Tsu04g03150 568 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 10 565 IPR044599 GO:0000373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03150 Tsu-Chr4 39266905 39273039 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03150 - - gmx:100801953 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03150 04 39266905 39273039 Tsu04g03150 04 39266905 39273039 ECH