Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03065 ATGAAGTTCATGAAACTAGGATCTCGTCCAGATACTTTCTACACTACAGAGTCAGTAAGGTCAATTTCTTCTGAAATTTCAAGTGATCTCATAATTCAAGTAAAAGGAACTAGATATCTTCTTCATAAGTTTCCACTTCTATCAAAATGTTTGCAACTACAAAGAttatgttcaccaaatcatcatcaaataGTACAACTTCCCGATTTCCCCGGCGGAATAGAAGCATTTGAACTATGTGCAAAATTCTGCTATGGAATCACAATAACTATAAGTCCTTACAACATTGTATTGGCAAGATGCGCCTCGGAATATTTACAAATGAATGAAGATGCAGAAAAGGGTAACTTGATTTATAAGCTTGAAGTTTTCTTCAATTCATGCATCCTTCGAGGTTGGAAAGATTCAATTGTGACATTACAAACTACAAAAGTGTTGTCTTTATGGTCGGAGGATTTGTCAATTACAAATAGATGCATTGAAGCTGTTTGTTCAAAGGTCTCAAAGAGGGTtagaaatgatgatgatgtatcTTGTAGTGGAACAGAAAGTTTGAGAGATAAATCAATAAGAGAAAGATGGTGGGGTGAAGATTTAGCAGAATTGAAAATTGATCTTTATTGGAGAATTATGATTGCTGTAAAATCTGATGGAAAGATACCTTCAAATCTTATTGGTGATGCTTTGAAAATTTATGCTTATAGATGGTTACCAAAAATTGGTTCTGATTCTGAATCAGGAAGTGAAATAGCTTCAATGCATGTTTTGCTTTTGGAATCAATAGTAAATTTGCTTCCGGCTGAAAAAGACGCTGTTTCTTGTAGCTTTCTTCTTAAGCTTTTGAAAGTAGCCAATGTTTTGAAtgtttcttcatcttcaaagaTGGAATTGGTTAAAAGGGTAGGACTTCAATTAGAGGAAGCAACATTGAATGATCTTATAATGGTTTGTGATGTGGATTTGGTGATTAAAATTTCGGAACAGTTTATGTTGCAATTGGGTCAAAGTCCACCAACTAGTCCTGTAAGATCAAGGCTGGTTTCTGAGAGAAGGCGATCACGTTCGGCTGAGAATGTTGATTTTGAATTGCAAGAGGGTAGAAGATCTTCATCAGCTTCACATAGTTCAAAATTGAAGGTCGCTAAGCTTGTTGAAAGGTATCTGATAGAGGTTGCTAAGGATGTGAGTTTGCCTCTGGATAAATTTGTTGCTCTTGCGGAAAGTGTACCTGAATTTGCAAGATGTGATCATGATGATCTTTACAGTGCTATTGATACTTATCTCAAGGTAAATTTTGAAGAacttattttgttatttatcaAGATAACTGCATTTTTTGAGtga 1344 0.3318 MKFMKLGSRPDTFYTTESVRSISSEISSDLIIQVKGTRYLLHKFPLLSKCLQLQRLCSPNHHQIVQLPDFPGGIEAFELCAKFCYGITITISPYNIVLARCASEYLQMNEDAEKGNLIYKLEVFFNSCILRGWKDSIVTLQTTKVLSLWSEDLSITNRCIEAVCSKVSKRVRNDDDVSCSGTESLRDKSIRERWWGEDLAELKIDLYWRIMIAVKSDGKIPSNLIGDALKIYAYRWLPKIGSDSESGSEIASMHVLLLESIVNLLPAEKDAVSCSFLLKLLKVANVLNVSSSSKMELVKRVGLQLEEATLNDLIMVCDVDLVIKISEQFMLQLGQSPPTSPVRSRLVSERRRSRSAENVDFELQEGRRSSSASHSSKLKVAKLVERYLIEVAKDVSLPLDKFVALAESVPEFARCDHDDLYSAIDTYLKVNFEELILLFIKITAFFE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03065 447 Gene3D Potassium Channel Kv1.1; Chain A 19 122 IPR011333 -
Tsu04g03065 447 Pfam NPH3 family 194 430 IPR027356 -
Tsu04g03065 447 ProSiteProfiles NPH3 domain profile. 193 447 IPR027356 -
Tsu04g03065 447 PANTHER OS12G0117600 PROTEIN 1 431 IPR043454 -
Tsu04g03065 447 SUPERFAMILY POZ domain 22 110 IPR011333 -
Tsu04g03065 447 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03065 Tsu-Chr4 37920293 37922369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03065 26 429 EF-hand Containing Proteins AT3G44820 31.915 2.93e-57 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03065 - - cit:102615523 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03065 04 37920293 37922369 Tsu04g03065 04 37920293 37922369 ECH