Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03019 ATGGCTTTCTCTACTTCCTTCCTTAAACCAAATCATTCTCTTCTCTTGTCTCACAAATACAAACTTCCAACTCATAACCATGGTTCCAGAAACCAGTTCTGTGTAATGGCTTCATCTAGTGATGGAGAAAGGACTattataaagaaagaaaaagatgaatgGAAAATCAATTTCTCATCTGAAAAACCAGTAACACCATTGTTGGATACAATTAATTATCCAGTTCATATGAAGAATTTGTCCACACAGGATCTGGAACAATTGGCAGCAGAACTAAGGGCAGACATTGTCCACAGTGTGTCAAACTCTGGTGGGCATCTTAGCTCAAGTTTAGGAGTGGTGGAGTTATCAGTGGCTCTTCATCATGTTTTCAACACCCCTGATGATAAGATCATATGGGATGTTGGCCATCAgGCATATGCACACAAGATTCTCACAGGCAGAAGGTCAAGGATGCACACCATTAGGAAGACATCAGGACTGGCAGGTTTTCCCAAAAGGGATGAGAGTGTTCATGATGCTTTTGGTGTAGGCCACAGTTCTACAAGTATATCAGCAGGACTTGgTATGGCAGTTGGAAGGGATTTATTGGGAAAGAACAACAGTGTGATTTCAGTGATTGGAGACGGAGCAATGACTGCAGGCCAAGCTTATGAAGCCATGAACAATGCAGGATTCCTTGATGCTAATTTGATAGTTATTCTTAATGATAACAAGCAAGTTTCTTTACCAACTGCCACACTTGATGGCCCTGCAACACCAGTTGGAGCCCTCAGTGGTACTTTAAGCAAAATTCAAGCAAGCACTCAATTCCGCAAACTTAGAGAAGCCGCGAAAAGCATCACAAAGCAAATAGGAGGACAAACACACCAAGTTGCATCAAAAGTGGATAAGTATGCAAGAGATTTCATTAGTGGTTCTGGTTCTTCAATCTTTGAGGAACTTGGTTTATACTACATTGGTCCTGTTGATGGTCATAACGTTGAAGATCTAGTcacaatttttgaaaaagtgAAATCAATGCCAGCCCCGGGTCCGGTTTTGATTCATATTGTGACAGAAAAAGGAAAGGGATACCCTCCAGCTGAAGCAGCAGCTGATAAAATGCATGGTGTTGTCAAGTTTGATCCAAAAACAGGCAACCAGTTCAAGGCAAAACCCTCTACACTTTCATACACACAATACTTTGCTGAATCATTGATTAAGGAAGCTGAGGCAGACAGTAAGATAGTTGCCATTCATGCAGCAATGGGTGGTGGAACTGGCCTAAATTATTTCCAGAAAAAGTTTCCAGAGCGGTGTTTTGATGTTGGGATAGCCGAACAGCATGCTGTTACATTTGCTGCAGGGTTAGCTGCTGAAGGCCTCAAGCCATTTTGTACTATTTATTCATCATTCCTACAACGCGGATACGATCAGGTAGTTCATGACGTTGATCTCCAAAAACTACCTGTTCGATTTGCAATGGATAGAGCTGGTTTAGTTGGTGCAGATGGACCAACTCATTGTGGAGCGTTTGATATCACTTACATGGCTTGCTTGCCAAACATGGTTGTTATGGCTCCATCCGATGAAGCTGAATTAATGCACATGGTTGCAACTGCTGCAGCTATAGATGACAGACCAAGTTGCTTTAGATTTCCAAGGGGAAATGGAATTGGTGCCAAACTTCCCCTCAATAACAAAGGAACCCCACTTGAGATTGGAAAAGGTAGAATTCTGATAGAAGGAAGCAGAGTTGCGCTTTTGGGATATGGTTGTATGGTTCAGCAATGCATGAAAGCAGCAGAAATGCTTAAGGCAGTGGGGGTTTATGTGACAGTTGCTGATGCTAGGTTTTGCAAACCTTTGGATACTAACCTCACCAGGCTTCTAGCTAAAGAACATGAAATACTCATCACAGTGGAAGAGGGTTCTATTGGTGGTTTTGGATCACATGTTTCACAATTCTTAAGCTTAGCTGGTCTCCTTGATGGACCACTTAAGTTGAGAGCAATGATGCTTCCTGATAGGTACATTGACCATGGATCACCCAATGATCAGATTGATCAAGCAGGTCTTTCATCAAAGCATATTCTAGGCACAGTCTTGTCCCTTTTGGAAATGCCAAAAGAAGCtcttttgttcaaataa 2133 0.4116 MAFSTSFLKPNHSLLLSHKYKLPTHNHGSRNQFCVMASSSDGERTIIKKEKDEWKINFSSEKPVTPLLDTINYPVHMKNLSTQDLEQLAAELRADIVHSVSNSGGHLSSSLGVVELSVALHHVFNTPDDKIIWDVGHQAYAHKILTGRRSRMHTIRKTSGLAGFPKRDESVHDAFGVGHSSTSISAGLGMAVGRDLLGKNNSVISVIGDGAMTAGQAYEAMNNAGFLDANLIVILNDNKQVSLPTATLDGPATPVGALSGTLSKIQASTQFRKLREAAKSITKQIGGQTHQVASKVDKYARDFISGSGSSIFEELGLYYIGPVDGHNVEDLVTIFEKVKSMPAPGPVLIHIVTEKGKGYPPAEAAADKMHGVVKFDPKTGNQFKAKPSTLSYTQYFAESLIKEAEADSKIVAIHAAMGGGTGLNYFQKKFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCTIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGAKLPLNNKGTPLEIGKGRILIEGSRVALLGYGCMVQQCMKAAEMLKAVGVYVTVADARFCKPLDTNLTRLLAKEHEILITVEEGSIGGFGSHVSQFLSLAGLLDGPLKLRAMMLPDRYIDHGSPNDQIDQAGLSSKHILGTVLSLLEMPKEALLFK 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03019 710 Gene3D - 569 701 IPR009014 GO:0003824
Tsu04g03019 710 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 68 353 IPR005477 GO:0008661|GO:0016114
Tsu04g03019 710 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 64 452 IPR029061 -
Tsu04g03019 710 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 1 710 - -
Tsu04g03019 710 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 70 698 IPR005477 GO:0008661|GO:0016114
Tsu04g03019 710 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 67 701 IPR005477 GO:0008661|GO:0016114
Tsu04g03019 710 Pfam Transketolase, C-terminal domain 569 692 IPR033248 -
Tsu04g03019 710 CDD TPP_DXS 104 359 IPR005477 GO:0008661|GO:0016114
Tsu04g03019 710 SMART Transket_pyr_3 390 555 IPR005475 -
Tsu04g03019 710 CDD TPP_PYR_DXS_TK_like 396 549 - -
Tsu04g03019 710 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 710 IPR005477 GO:0008661|GO:0016114
Tsu04g03019 710 Gene3D - 60 362 - -
Tsu04g03019 710 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 387 578 IPR029061 -
Tsu04g03019 710 Pfam Transketolase, pyrimidine binding domain 390 551 IPR005475 -
Tsu04g03019 710 Gene3D - 390 558 - -
Tsu04g03019 710 SUPERFAMILY TK C-terminal domain-like 564 701 IPR009014 GO:0003824
Tsu04g03019 710 ProSitePatterns Transketolase signature 1. 93 112 IPR005474 -
Tsu04g03019 710 ProSitePatterns Transketolase signature 2. 496 512 IPR020826 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03019 Tsu-Chr4 37345222 37349856 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03019 K01662 - gmx:100798930 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03019 04 37345222 37349856 Tsu04g03019 04 37345222 37349856 ECH