Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02867 ATGGGTTTGTTTGGACTAAGAGAAAGTTCAACTACTTTTGCTTCTGTTATAGCTCTTTGCACAAATAATGGGTTTTGGAAAGAAGGTTCTCAGGTTCATTGTAGGGTTGTAAAGTTTGGCTTTTTGAACAATGTGTTTGTTGGTGGTGCACTTGTTGGGTTCTATATGAATTTTAAGTTAAGTGGGGTTGCACTTGAGCTGTTTGATGAGTTGTCTGAGAGAAATTTGGCTGTTTGGAATGTGATGCTACGTGGATTTTGTGAAATGGGTTGTGTGGTGGAAGAGTTACTTGGACTTTACTCTAGGATGTGTTTTGAAGGTttttataattttatgcAACTGTGGGGACATAGGCCGTCGGTTCGTTCGTTTGTTGGTTTCTTGAATTTATGTAGTAGAACTAAGGACATTGGTTTGGGGAAGCAGATACATTGTTGTGTTCTGAAATTTGGTTTTGATGAAAGGAGTGTGTATGTTCAATCTGCTTTGATTGATATGTATGGAAAATGTTTGGACATTGAGAGTTCTGTAGATGTATTTGAATGGCTTCCTAAGAGAACTTTGGAGTGTTGTAATTCATTGATGGCTTCTTTGTCTCATTGTGGTTGTATTGAAGATGTGGTGGAATTGTTTGGTTTAATGGTTGATGAAGGTCTTATGCCAGATGAAGTAACTGTCTCGATGACACTGAAGGCGATATCGGTGTCTGCTTCGGCAAGTTTTACTAGCACTCAGTTATTGCATTGTGTTGCATTGAAATCTGGAGTTGAAGGAGACACCGCGGTTCTGTGTTCCCTTATGGATGCATATTCAAAATGTGGACATGTGGAACTTTCTCGTCAGATTTTCGAGACAATTCCAACACCAAATGCCATTTGCTTCACTTCTATGATCAATGGTTATGCCCGAAATGGAATGGGAAAAGAAGGACTTTCGTTGCTTCATGCTATGATTGAGAAAGGAGTAAAACCAGACGAAGTTACCTTCTTATGTGCATTAACGGGGTGTAGCCATACCGGACTTGTCAAGGAAGGAAGAGCACTCTTTAACTCAATGAAATCTCTTCACGATGTTCACCCAGATCGGAGACATTTTTCATGCATGGTGGATCTTTTATGTCGCGTAGGACTTCTACATGAAGCCGAAGAGTTTCTTCTAAATGCACAAGGAAAAGGAGACTGTTTTATGTGGAGCTCTTTGCTCCAAAGTTGCAGGGTTCACAAGAATGAAGAGGTTGGAACAAGAGCAGCACAAATGTTGGTTGATCTAGATCCAGATGACCCTGCAGTGTGGTTACAAGCTTCAAATTTCTATGCAGAGATAGGAAAATTTGACGCGTCAAGACAACTAAGAGAAGTTGCTCTAGCCAGAAAGATGTATAGGGAGATTGGTTTGGCAAATGGAGTTTCAGGAAGCATGATGTGTCGCAACAACTTTGGCATGCTTGATGAACTCAACAACTTGGACACAGAGGAAGAGAACGAGGTTGAACTTTCTGACATCCCTTCATGGACAAGTGAACGTGGTGGTAAAGTTCTTGTAAATGTTGATAGCTTTGGTGCTGTCGGAAATGGAGAAGCTGATGATACTCAGGCTCTTCAAAAAGCATGGGGAGTTGCGTGTTCTACACCAAAATCTGTTCTGTTGGTTCCCCAAGGACGCCGTTACCTTGTCAATGCAACGAAATTCATAGGGCCTTGTAAAGACAATTTAATCATCCAGATTGATGGAACACTGGTTGCTCCAGACAATCCTAAGAACTGGGATCCAAAACTTCCACGCGTTTGGCTtgatttttctaaattgaaaaaaGCTGTTTTCCAAGGCTCTGGAATTATTGATGGCTCAGGAAGTAAATGGTGGGCAGCATCTTGCAAAAAGAACAAGGCTAAtCCTTGCATAGGTGCACCAACAGCACTAACCATTGATACAAGTTCAGCTATAAAGGTGAAAGGACTAACTATCCAGAATAGCCAACAGATGCATTTTACGATATCACGATGTGATTCTGTTCGAATTTTAGGAGTGAAAGTGTCTTCACCAGGAGACAGTCCAAACACTGATGGAATTCATATTAGTGAATCAACAAATGTCATTGTCCAAGACTGCAAAATTGGAACAGGGGATGATTGCATATCAATTGTGAATGCTAGTTCTAAtatcaaaatgaaaagaattcATTGTGGACCGGGACATGGAATCAGCATTGGAAGCCTTGGTAAAGACAACTCAACAGGTGTAGTGACAAAAGTGATTTTGGATACAGCATTTATAAAGGATACTACCAATGGTCTCAGAATTAAGACTTGGCAGGGAGGTGCTGGATATGTTAAAGGGGTAAGATTTCAGAATGTGATGGTGGAAAATGTATCAAACCCTATTCTTATAGATCAATTTTACTGTGATTCGCCATCCTCATGTCAAAACCAGTCATCAGCTTTGGAGATAAGTGAGATAATGTACCAAAACATAACAGGGACTACAAATAGTGCCAAGGCCATTAAATTTGATTGCAGTGACACTGTTCCATGCAGCAACTTAGTCCTTAGCAATGTTGATTTGAATAAACAAGATGGCACTGTTGAAACATATTGTCACTCAGCTCAAGGATTTGGATATGGTGTAGTTCATCCTTCTGCTGATTGCCTTAATTCCAGTGATAAAATCTctcaagttgatgaatcttccgAGGATGATGACATTCGTCATACCGAACTATAA 2721 0.3947 MGLFGLRESSTTFASVIALCTNNGFWKEGSQVHCRVVKFGFLNNVFVGGALVGFYMNFKLSGVALELFDELSERNLAVWNVMLRGFCEMGCVVEELLGLYSRMCFEGFYNFMQLWGHRPSVRSFVGFLNLCSRTKDIGLGKQIHCCVLKFGFDERSVYVQSALIDMYGKCLDIESSVDVFEWLPKRTLECCNSLMASLSHCGCIEDVVELFGLMVDEGLMPDEVTVSMTLKAISVSASASFTSTQLLHCVALKSGVEGDTAVLCSLMDAYSKCGHVELSRQIFETIPTPNAICFTSMINGYARNGMGKEGLSLLHAMIEKGVKPDEVTFLCALTGCSHTGLVKEGRALFNSMKSLHDVHPDRRHFSCMVDLLCRVGLLHEAEEFLLNAQGKGDCFMWSSLLQSCRVHKNEEVGTRAAQMLVDLDPDDPAVWLQASNFYAEIGKFDASRQLREVALARKMYREIGLANGVSGSMMCRNNFGMLDELNNLDTEEENEVELSDIPSWTSERGGKVLVNVDSFGAVGNGEADDTQALQKAWGVACSTPKSVLLVPQGRRYLVNATKFIGPCKDNLIIQIDGTLVAPDNPKNWDPKLPRVWLDFSKLKKAVFQGSGIIDGSGSKWWAASCKKNKANPCIGAPTALTIDTSSAIKVKGLTIQNSQQMHFTISRCDSVRILGVKVSSPGDSPNTDGIHISESTNVIVQDCKIGTGDDCISIVNASSNIKMKRIHCGPGHGISIGSLGKDNSTGVVTKVILDTAFIKDTTNGLRIKTWQGGAGYVKGVRFQNVMVENVSNPILIDQFYCDSPSSCQNQSSALEISEIMYQNITGTTNSAKAIKFDCSDTVPCSNLVLSNVDLNKQDGTVETYCHSAQGFGYGVVHPSADCLNSSDKISQVDESSEDDDIRHTEL 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02867 906 Pfam PPR repeat family 289 337 IPR002885 -
Tsu04g02867 906 TIGRFAM PPR: pentatricopeptide repeat domain 292 326 IPR002885 -
Tsu04g02867 906 TIGRFAM PPR: pentatricopeptide repeat domain 78 108 IPR002885 -
Tsu04g02867 906 TIGRFAM PPR: pentatricopeptide repeat domain 190 223 IPR002885 -
Tsu04g02867 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Tsu04g02867 906 Gene3D - 503 904 IPR012334 -
Tsu04g02867 906 Pfam PPR repeat 78 94 IPR002885 -
Tsu04g02867 906 Pfam PPR repeat 365 385 IPR002885 -
Tsu04g02867 906 Pfam PPR repeat 190 219 IPR002885 -
Tsu04g02867 906 SUPERFAMILY Pectin lyase-like 512 883 IPR011050 -
Tsu04g02867 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Tsu04g02867 906 MobiDBLite consensus disorder prediction 887 906 - -
Tsu04g02867 906 PANTHER BNAA08G20470D PROTEIN 491 892 - -
Tsu04g02867 906 Pfam Glycosyl hydrolases family 28 545 865 IPR000743 GO:0004650|GO:0005975
Tsu04g02867 906 Gene3D Tetratricopeptide repeat domain 241 427 IPR011990 GO:0005515
Tsu04g02867 906 PANTHER - 491 892 - -
Tsu04g02867 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 110 IPR002885 -
Tsu04g02867 906 ProSitePatterns Polygalacturonase active site. 725 738 IPR000743 GO:0004650|GO:0005975
Tsu04g02867 906 Gene3D Tetratricopeptide repeat domain 107 240 IPR011990 GO:0005515
Tsu04g02867 906 Gene3D Tetratricopeptide repeat domain 1 106 IPR011990 GO:0005515
Tsu04g02867 906 MobiDBLite consensus disorder prediction 891 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02867 Tsu-Chr4 34610797 34617395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02867 474 906 Glycoside Hydrolase AT1G23460 69.266 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02867 - - pvu:PHAVU_003G061700g 1349.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02867 04 34610797 34617395 Tsu04g02867 04 34610797 34617395 ECH