Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02861 ATGGCTGAAAACAACAAAGACATTGAAACCGTTATCAGAAGAGTAACCTCTGTAACTAACCACCTCATTTCCTCTCCACCACCTCAACAACTTATTTCCTTGTTTCACACTTCGGGGAGTTCCAAGAATAGCTACCAACGTGTTCATGGTGATGTTCCCTCTCATGATGTTGTTTGGAAGAAAGTTGCTTCTGATGATCAAGGAAAGGATTTCACTGACATTGTTTATGAGAAATCTGTTGGTGAAGAAGGAATTGCTAAGATTACTATAAATAGGCCAGAGAGAAGGAATGCTTTTCGTCCTCACACGATTAAGGAACTTATTCGTGCTTTCAATGATGCTAGGGATGATCCCTCTATTGGTGTCATCATTCTCACTGGAAAGGGAACAAATGCATTTTGCAGTGGTGGTGACCAAGCCTTGAGGACTGAAGATGGTTATGCTGATCATGAAAATATTGGTAGCCTTAATGTGTTAGACTTACAGGTGCAGATTCGCCGCCTTCCAAAACCAGTAATTGCAATGGTTGCAGGGTATGCTGTTGGAGGAGGGCATATATTACATATGGTTTGTGATTTAACCATTGCAGCAGATAATGCCATTTTCGGCCAAACTGGTCCTAAGGTTGGGAGCTTTGATGCTGGTTATGGAAGTTCTATCATGTCGCGTTTGGTTGGTCCGAAAAAAGCGCGTGAAATGTGGTTTCTCACAAGGTTTTATACTGCTGACGAAGCTGAGAAAATGGGCCTTATCAATACTGTTGTACCACTAGagaatttagaaaaagaaacaatCAAATGGTGTAGGGAGATACTCAGAAACAGCCCAACTGCAATTCGGGTTCTCAAGGCCGCTATTAATGCGGTGGATGACGGGCACGCCGGACTTCAGGAAATGGGTGGAAATtcaacattattattttatggCACTGAAGAAGCAAATGAAGGAAAAACTGCATATATGGAGCGTAGACGCCCAGATTTTTCTAAGTTTAATAGAAGACCATAA 1008 0.4087 MAENNKDIETVIRRVTSVTNHLISSPPPQQLISLFHTSGSSKNSYQRVHGDVPSHDVVWKKVASDDQGKDFTDIVYEKSVGEEGIAKITINRPERRNAFRPHTIKELIRAFNDARDDPSIGVIILTGKGTNAFCSGGDQALRTEDGYADHENIGSLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTADEAEKMGLINTVVPLENLEKETIKWCREILRNSPTAIRVLKAAINAVDDGHAGLQEMGGNSTLLFYGTEEANEGKTAYMERRRPDFSKFNRRP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02861 335 TIGRFAM menB: naphthoate synthase 71 331 IPR010198 GO:0008935|GO:0009234
Tsu04g02861 335 SUPERFAMILY ClpP/crotonase 70 330 IPR029045 -
Tsu04g02861 335 Gene3D - 52 272 - -
Tsu04g02861 335 ProSitePatterns Enoyl-CoA hydratase/isomerase signature. 173 193 IPR018376 GO:0003824
Tsu04g02861 335 CDD crotonase-like 74 271 - -
Tsu04g02861 335 Pfam Enoyl-CoA hydratase/isomerase 82 329 IPR001753 GO:0003824
Tsu04g02861 335 PANTHER NUCLEOSIDE-DIPHOSPHATE-SUGAR EPIMERASE 10 335 IPR010198 GO:0008935|GO:0009234
Tsu04g02861 335 Gene3D - 273 323 IPR014748 -
Tsu04g02861 335 Hamap 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 59 334 IPR010198 GO:0008935|GO:0009234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02861 Tsu-Chr4 34548829 34552454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02861 1 335 Acyl Lipid Metabolism Gene Families AT1G60550 77.059 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02861 K01661 - gmx:100807101 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02861 04 34548829 34552454 Tsu04g02861 04 34548829 34552454 ECH