Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02831 ATGTTATGGAAGCGTATGTATGGAAACAACATTTGGGCGCAGCATACTGATGAGTTGGAAGGTTTGAACAAAGATTTCAAGAAGATGTTGAGTGAAAATGCAGATTTCAAGGCACTTGCTGTGAAAGAAATTCACGCAGCGTCTGATGGAACTAGAAAGATTTTATTCACATTAGATGATGGAATGGTCATAGAAACAGTTGTGATACCTTGTGATAGAGGCAGGACTACTGTGTGTGTTTCTAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACTGGAAGAATGGGTCTTAAGAGACATCTTACTGCCGCAGAAATAGTTGAGCAGGCCGTTTTTGCCAGACGTCTATTCACAAGTGAAGCTGGTTCCATCACCAATGTTGTGTTTATGGGCATGGGGGAACCTCTTCATAACATTGATAACGTCATTAAAGCTGCAGATATTATGGTGCATGATCAAGGGCTTCATTTCAGCCCCCGCAAGGTCACTGTTTCAACCAGTGGGCTTGTTCCGCAACTCAGACGTTATCTTCAGGAATCCAACTGTGCTATTGCTGTTAGTTTGAATGCAACTACTGATGAgGTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTGGATTTGCTTCTTGAGACGCTTCGGGAGGAGCTTTCCTTCAAACACAAATATAAGGTTCTATTTGAGTATGTGATGCTTGAAGGAATTAATGACAGCAATGAAGATGCAAAGAGGCTTGTTGAACTTGTGAAGGGGATCCCTTGCAAGATCAATCTCATATCATTCAATCCACATAGTGGATCCTTCTTCAAACCAACTAAAGAGGAAAGGATGATTGAATTCCGAAATATGCTAGCTGAGGCAGGATGTGTAGTCCTTTTAAGACCGAGCAGAGGTGATGATCAAATGGCTGCATGTGGTCAGTTAGGCAAGCCCGGCACCATTCAAGCTCCGATGCTCCGTGTCCCTCAGCAATTCCAAATGGCAGTGGGAAGTTCAACGTGA 1017 0.4238 MLWKRMYGNNIWAQHTDELEGLNKDFKKMLSENADFKALAVKEIHAASDGTRKILFTLDDGMVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLFTSEAGSITNVVFMGMGEPLHNIDNVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLRRYLQESNCAIAVSLNATTDEVRNWIMPINRKYKLDLLLETLREELSFKHKYKVLFEYVMLEGINDSNEDAKRLVELVKGIPCKINLISFNPHSGSFFKPTKEERMIEFRNMLAEAGCVVLLRPSRGDDQMAACGQLGKPGTIQAPMLRVPQQFQMAVGSST 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02831 338 Pfam 4Fe-4S single cluster domain 85 190 - -
Tsu04g02831 338 SUPERFAMILY Radical SAM enzymes 74 292 - -
Tsu04g02831 338 SFLD methyltransferase (Class A) 2 315 - -
Tsu04g02831 338 SFLD adenosine C2 methyltransferase (RlmN-like) 2 315 IPR004383 GO:0006364|GO:0008173
Tsu04g02831 338 PIRSF Cfr 1 326 IPR004383 GO:0006364|GO:0008173
Tsu04g02831 338 PANTHER 23S RRNA METHYLTRANSFERASE 1 321 IPR040072 -
Tsu04g02831 338 CDD Radical_SAM 85 285 - -
Tsu04g02831 338 Gene3D Aldolase class I 38 319 IPR013785 -
Tsu04g02831 338 ProSiteProfiles Radical SAM core domain profile. 72 305 IPR007197 GO:0003824|GO:0051536
Tsu04g02831 338 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 13 314 IPR027492 GO:0030488|GO:0070475
Tsu04g02831 338 Pfam Radical SAM superfamily 81 246 IPR007197 GO:0003824|GO:0051536
Tsu04g02831 338 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 1 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02831 Tsu-Chr4 33754100 33761487 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02831 K06941 - gmx:100813692 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02831 04 33754100 33761487 Tsu04g02831 04 33754100 33761487 ECH